Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq16688 104 9e-17
seq26232 96.9 1e-14
seq31179 91.5 6e-13
seq20546 84.2 9e-11
>seq16688
Length=7170
Score = 104 bits (114), Expect = 9e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| | || ||| | ||||| || || ||||||||||| | || || || || ||
Sbjct 1134 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1193
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| ||||| ||| | ||||| || |||||||| ||||| || |||||
Sbjct 1194 AAAGATGCTGGAACCATTGCAGGTCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 1253
Query 451433 GCTGCTCTAGCATATGGACT 451452
||||| |||| ||||| ||
Sbjct 1254 GCTGCCATAGCCTATGGTCT 1273
>seq26232
Length=2247
Score = 96.9 bits (106), Expect = 1e-14
Identities = 276/419 (66%), Gaps = 9/419 (2%)
Strand=Plus/Minus
Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252
|| |||||| | | ||||| | || || ||||| | || || || || || ||
Sbjct 1970 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 1911
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
|| || ||||| ||||| || ||||| || | || || ||| | || | | |
Sbjct 1910 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAA 1852
Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
| | | || ||| || || || || |||||||| |||||||| | ||||| || || ||
Sbjct 1851 GGTGCAGAATGCTGTTATCACAGTGCCCGCTTACTTCAATGACTCCCAACGCCAGGCCAC 1792
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
||||| || || || |||| | || || | || ||||| ||||| || |||||
Sbjct 1791 CAAAGACGCTGGCACCATCACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGC 1732
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486
||||||| |||| ||||| || ||| || ||| | | | | ||| || || |
Sbjct 1731 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAACGTG 1674
Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546
| | ||||| || || || || ||| |||| || | ||| | || || |||||
Sbjct 1673 CTCATCTTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATCGAGGATGGC 1614
Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
| ||||| || ||| | || |||||| || ||||| || || || || |||| ||
Sbjct 1613 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1555
>seq31179
Length=12480
Score = 91.5 bits (100), Expect = 6e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276
|| ||||| || || || | ||| || ||||||||||| || |||||| | || |||
Sbjct 10040 TACAAAGGCGAGACAAAGAGTTTCCACCCAGAAGAAATTTCTTCCATGGTTTTAACCAAA 9981
Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336
||||| |||| |||||| |||| | || | ||||| | || ||| | |||||
Sbjct 9980 ATGAAGGAAATTGCAGAAGCATATCTCGGGAAGACCATTACTAACGCTGTAGTGACTGTA 9921
Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384
|| || ||||||||||| | || || || || || |||||||| |||
Sbjct 9920 CCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATGCTGGA 9873
>seq20546
Length=6288
Score = 84.2 bits (92), Expect = 9e-11
Identities = 83/107 (78%), Gaps = 3/107 (3%)
Strand=Plus/Minus
Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246
|||| |||||| |||||||||| || | ||||| | || ||||| |||||||||
Sbjct 5774 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 5715
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293
||||||||||| | ||||| || || || ||||| ||||| |||||
Sbjct 5714 GAAGAAATTTCTGCAATGGTCCTGACAAAGATGAAGGAAACTGCAGA 5668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1973943339265176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |