Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq16688 104 9e-17 seq26232 96.9 1e-14 seq31179 91.5 6e-13 seq20546 84.2 9e-11 >seq16688 Length=7170 Score = 104 bits (114), Expect = 9e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| | || ||| | ||||| || || ||||||||||| | || || || || || Sbjct 1134 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1193 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| ||| | ||||| || |||||||| ||||| || ||||| Sbjct 1194 AAAGATGCTGGAACCATTGCAGGTCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 1253 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 1254 GCTGCCATAGCCTATGGTCT 1273 >seq26232 Length=2247 Score = 96.9 bits (106), Expect = 1e-14 Identities = 276/419 (66%), Gaps = 9/419 (2%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | || || || || || || Sbjct 1970 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 1911 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| || ||||| || | || || ||| | || | | | Sbjct 1910 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAA 1852 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | | | || ||| || || || || |||||||| |||||||| | ||||| || || || Sbjct 1851 GGTGCAGAATGCTGTTATCACAGTGCCCGCTTACTTCAATGACTCCCAACGCCAGGCCAC 1792 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||| || || || |||| | || || | || ||||| ||||| || ||||| Sbjct 1791 CAAAGACGCTGGCACCATCACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGC 1732 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486 ||||||| |||| ||||| || ||| || ||| | | | | ||| || || | Sbjct 1731 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAACGTG 1674 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | | ||||| || || || || ||| |||| || | ||| | || || ||||| Sbjct 1673 CTCATCTTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATCGAGGATGGC 1614 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||| | || |||||| || ||||| || || || || |||| || Sbjct 1613 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1555 >seq31179 Length=12480 Score = 91.5 bits (100), Expect = 6e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || ||||| || || || | ||| || ||||||||||| || |||||| | || ||| Sbjct 10040 TACAAAGGCGAGACAAAGAGTTTCCACCCAGAAGAAATTTCTTCCATGGTTTTAACCAAA 9981 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| |||| |||||| |||| | || | ||||| | || ||| | ||||| Sbjct 9980 ATGAAGGAAATTGCAGAAGCATATCTCGGGAAGACCATTACTAACGCTGTAGTGACTGTA 9921 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || ||||||||||| | || || || || || |||||||| ||| Sbjct 9920 CCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATGCTGGA 9873 >seq20546 Length=6288 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 5774 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 5715 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| | ||||| || || || ||||| ||||| ||||| Sbjct 5714 GAAGAAATTTCTGCAATGGTCCTGACAAAGATGAAGGAAACTGCAGA 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973943339265176