Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq16688 201 1e-46
seq31179 95.1 2e-14
seq20546 82.4 1e-10
>seq16688
Length=7170
Score = 201 bits (222), Expect = 1e-46
Identities = 374/545 (69%), Gaps = 12/545 (2%)
Strand=Plus/Minus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || || ||||| || || || | || ||||| ||||| || || ||
Sbjct 1925 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1866
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
||||| | || || || || || ||||| || || || ||||| |||| |||||
Sbjct 1865 AAATCCTGCAGCAGTTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGGACGATG 1806
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217
|||| | | |||||| || | ||| | ||||| || | ||||| ||||| ||||
Sbjct 1805 TCATGGATCTGCGATTTGTCCAGCTTGGCATCTCGCAGGGCCTTTTCCACAGGATCCAGG 1746
Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276
||| |||||||| ||| ||| || ||||| || || | ||| ||||||||
Sbjct 1745 GTACC---ACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATGTG 1689
Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336
||||| |||| || || || | |||||||||||||| | | || | | || ||
Sbjct 1688 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTGGACGAC 1629
Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396
| || ||||| || ||||| || || || || | ||||||| || | | ||| |
Sbjct 1628 AGAGTACGCTTCGCACGCTCGCAGGCGGTACGGAGGCGACGAACTGCTCTCTTGTTCTCA 1569
Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTC 7453
|| |||||||| || || ||||| ||||| || ||||| || || | | | |
Sbjct 1568 CTGATGTCTTTCTTGTGCTTGCGTTTGAACTCAGCAATGAAGTGGTTGACCATGCGGTT- 1510
Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513
||| || ||||| ||||||||||| || || || || || | ||| || ||||||||
Sbjct 1509 --ATCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATG 1452
Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573
|| ||||||| | | | || |||||||| || ||||| || |||||||| || ||
Sbjct 1451 CCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCGAGGTCAAAGATAAGA 1392
Query 7574 ACGTT 7578
|| ||
Sbjct 1391 ACATT 1387
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694
||||||||||| || ||||| ||||| | || || | | |||||| |||||
Sbjct 2944 CCCTTATCATTTGTTATCGTGATCTTGTTCTCCTTGCCAGTGCTCTTATCCACAGCAGAC 2885
Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754
||||||| || ||||| ||||||| ||| || |||| | ||| || ||| ||| ||
Sbjct 2884 ACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATCTGAGGTACACCTCTG 2825
Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814
|| || | |||||||| || | ||||| | || || || |||| ||| | | | |
Sbjct 2824 GGAGCAGGGGGAATACCAGTCAGCTCAAACTTGCCCAGCAAGTTGTTGTCCTTAGTCATA 2765
Query 6815 TTACGTTCACCTTCATAGAC 6834
|||||| |||||||| ||
Sbjct 2764 GCACGTTCTCCTTCATATAC 2745
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/187 (71%), Gaps = 3/187 (2%)
Strand=Plus/Minus
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|||||||| || | |||||||| || |||||||||||| || || ||||| | |
Sbjct 290 AAAACTGTATTGGTTGGGTTCATTGCAACTTGGTTCTTCGCAGCATCGCCGATCAACCTC 231
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| || || || || |||||||| ||||| || || || || |||||||| |||
Sbjct 230 TCTGTA---TCGGTGAAGGCGACGTAGCTCGGGGTGGTCCGGTTACCCTGGTCGTTGGCA 174
Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137
|| ||||| || ||| || | |||||||| || ||||| || || || | |||
Sbjct 173 ATGATTTCCACCTTCCCGTGCTGGAACACGCCGACACAGGAATAGGTGGTGCCGAGGTCA 114
Query 8138 ATACCGA 8144
|| ||||
Sbjct 113 ATTCCGA 107
>seq31179
Length=12480
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCG 7724
|||| ||| | |||||||| || || || || || || || || || ||||| || || |
Sbjct 9866 CAATGGTTCCAGCATCTTTTGTAGCCTGACGCTGAGAGTCATTGAAATAGGCTGGTACAG 9925
Query 7725 TTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGG 7784
| || || |||| || | |||| |||||||| | ||| || || || ||||||||||
Sbjct 9926 TCACTACAGCGTTAGTAATGGTCTTCCCGAGATATGCTTCTGCAATTTCCTTCATTTTGG 9985
Query 7785 TAAGAACCATCGATGAAATCTCTTC 7809
| | |||||| || ||||| |||||
Sbjct 9986 TTAAAACCATGGAAGAAATTTCTTC 10010
>seq20546
Length=6288
Score = 82.4 bits (90), Expect = 1e-10
Identities = 123/174 (71%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || ||||| ||||||| ||| || || || || || |||||||||| ||
Sbjct 5028 TCAAAGTCTTCTCCACCCAGGTGAGTGTCACCATTAGTAGCCACAACTTCAAAGACTCCA 5087
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|||||| | | | || ||||||||||| |||||||||| |||||| | || | |
Sbjct 5088 TTGTCAATGGTGAGGAGGGAGACATCAAACGTTCCACCACCCAAGTCAAACACAAGGATG 5147
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
||| | ||| | ||| |||| || || ||||| ||||| || || ||||||
Sbjct 5148 TTCTTCTCGCCCTCT---CTCTTGTCCAGCCCGTAAGCGATGGCAGCAGCCGTT 5198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634576090222480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |