Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq16688 201 1e-46 seq31179 95.1 2e-14 seq20546 82.4 1e-10 >seq16688 Length=7170 Score = 201 bits (222), Expect = 1e-46 Identities = 374/545 (69%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 1925 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1866 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || || || || ||||| || || || ||||| |||| ||||| Sbjct 1865 AAATCCTGCAGCAGTTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGGACGATG 1806 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 |||| | | |||||| || | ||| | ||||| || | ||||| ||||| |||| Sbjct 1805 TCATGGATCTGCGATTTGTCCAGCTTGGCATCTCGCAGGGCCTTTTCCACAGGATCCAGG 1746 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||||| ||| ||| || ||||| || || | ||| |||||||| Sbjct 1745 GTACC---ACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATGTG 1689 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| || || || | |||||||||||||| | | || | | || || Sbjct 1688 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTGGACGAC 1629 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || ||||| || ||||| || || || || | ||||||| || | | ||| | Sbjct 1628 AGAGTACGCTTCGCACGCTCGCAGGCGGTACGGAGGCGACGAACTGCTCTCTTGTTCTCA 1569 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTC 7453 || |||||||| || || ||||| ||||| || ||||| || || | | | | Sbjct 1568 CTGATGTCTTTCTTGTGCTTGCGTTTGAACTCAGCAATGAAGTGGTTGACCATGCGGTT- 1510 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 ||| || ||||| ||||||||||| || || || || || | ||| || |||||||| Sbjct 1509 --ATCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATG 1452 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || ||||||| | | | || |||||||| || ||||| || |||||||| || || Sbjct 1451 CCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCGAGGTCAAAGATAAGA 1392 Query 7574 ACGTT 7578 || || Sbjct 1391 ACATT 1387 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||||||||| || ||||| ||||| | || || | | |||||| ||||| Sbjct 2944 CCCTTATCATTTGTTATCGTGATCTTGTTCTCCTTGCCAGTGCTCTTATCCACAGCAGAC 2885 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 ||||||| || ||||| ||||||| ||| || |||| | ||| || ||| ||| || Sbjct 2884 ACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATCTGAGGTACACCTCTG 2825 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | |||||||| || | ||||| | || || || |||| ||| | | | | Sbjct 2824 GGAGCAGGGGGAATACCAGTCAGCTCAAACTTGCCCAGCAAGTTGTTGTCCTTAGTCATA 2765 Query 6815 TTACGTTCACCTTCATAGAC 6834 |||||| |||||||| || Sbjct 2764 GCACGTTCTCCTTCATATAC 2745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||||||| || | |||||||| || |||||||||||| || || ||||| | | Sbjct 290 AAAACTGTATTGGTTGGGTTCATTGCAACTTGGTTCTTCGCAGCATCGCCGATCAACCTC 231 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || || || || || |||||||| ||||| || || || || |||||||| ||| Sbjct 230 TCTGTA---TCGGTGAAGGCGACGTAGCTCGGGGTGGTCCGGTTACCCTGGTCGTTGGCA 174 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || ||||| || ||| || | |||||||| || ||||| || || || | ||| Sbjct 173 ATGATTTCCACCTTCCCGTGCTGGAACACGCCGACACAGGAATAGGTGGTGCCGAGGTCA 114 Query 8138 ATACCGA 8144 || |||| Sbjct 113 ATTCCGA 107 >seq31179 Length=12480 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCG 7724 |||| ||| | |||||||| || || || || || || || || || ||||| || || | Sbjct 9866 CAATGGTTCCAGCATCTTTTGTAGCCTGACGCTGAGAGTCATTGAAATAGGCTGGTACAG 9925 Query 7725 TTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGG 7784 | || || |||| || | |||| |||||||| | ||| || || || |||||||||| Sbjct 9926 TCACTACAGCGTTAGTAATGGTCTTCCCGAGATATGCTTCTGCAATTTCCTTCATTTTGG 9985 Query 7785 TAAGAACCATCGATGAAATCTCTTC 7809 | | |||||| || ||||| ||||| Sbjct 9986 TTAAAACCATGGAAGAAATTTCTTC 10010 >seq20546 Length=6288 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||| ||| || || || || || |||||||||| || Sbjct 5028 TCAAAGTCTTCTCCACCCAGGTGAGTGTCACCATTAGTAGCCACAACTTCAAAGACTCCA 5087 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | | || ||||||||||| |||||||||| |||||| | || | | Sbjct 5088 TTGTCAATGGTGAGGAGGGAGACATCAAACGTTCCACCACCCAAGTCAAACACAAGGATG 5147 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 ||| | ||| | ||| |||| || || ||||| ||||| || || |||||| Sbjct 5148 TTCTTCTCGCCCTCT---CTCTTGTCCAGCCCGTAAGCGATGGCAGCAGCCGTT 5198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634576090222480