Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq16688 125 6e-23
seq31179 98.7 8e-15
>seq16688
Length=7170
Score = 125 bits (138), Expect = 6e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| | || ||| | ||||||||||| ||||| |||||||| || ||||| |||||
Sbjct 1134 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1193
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||| || || ||||| || || ||||||||||| || || |||
Sbjct 1194 AAAGATGCTGGAACCATTGCAGGTCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 1253
Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537
||||| | || ||||| || || |||
Sbjct 1254 GCTGCCATAGCCTATGGTCTGGACAAA 1280
Score = 86.0 bits (94), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||| | || ||||| || |||||||| || || ||||| ||||||
Sbjct 2808 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2867
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| || |||||||| ||||| |||||
Sbjct 2868 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2899
>seq31179
Length=12480
Score = 98.7 bits (108), Expect = 8e-15
Identities = 117/155 (75%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 550310 AAACAATTTTCACC-AGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368
||| | ||| |||| |||| ||||||| || |||||||||| |||||||| ||| ||
Sbjct 10026 AAAGAGTTTCCACCCAGAAGAAATTTCTTCCATGGTTTTAACCAAAATGAAGGAAATTGC 9967
Query 550369 CAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427
|| | | | || |||| |||| | || ||| | ||||||||||| ||||| |
Sbjct 9966 AGAAGCATATCTCGGG-AAGACCATTACTAACGCTGTAGTGACTGTACCAGCCTATTTCA 9908
Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462
||||||| || ||||| ||||| ||||||||||||
Sbjct 9907 ATGACTCTCAGCGTCAGGCTACAAAAGATGCTGGA 9873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4025587632389780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |