Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq16688 125 6e-23 seq31179 98.7 8e-15 >seq16688 Length=7170 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 1134 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1193 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || ||||||||||| || || ||| Sbjct 1194 AAAGATGCTGGAACCATTGCAGGTCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 1253 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1254 GCTGCCATAGCCTATGGTCTGGACAAA 1280 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 2808 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2867 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 2868 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2899 >seq31179 Length=12480 Score = 98.7 bits (108), Expect = 8e-15 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 550310 AAACAATTTTCACC-AGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368 ||| | ||| |||| |||| ||||||| || |||||||||| |||||||| ||| || Sbjct 10026 AAAGAGTTTCCACCCAGAAGAAATTTCTTCCATGGTTTTAACCAAAATGAAGGAAATTGC 9967 Query 550369 CAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427 || | | | || |||| |||| | || ||| | ||||||||||| ||||| | Sbjct 9966 AGAAGCATATCTCGGG-AAGACCATTACTAACGCTGTAGTGACTGTACCAGCCTATTTCA 9908 Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 ||||||| || ||||| ||||| |||||||||||| Sbjct 9907 ATGACTCTCAGCGTCAGGCTACAAAAGATGCTGGA 9873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025587632389780