Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 159 3e-34
seq15741 114 1e-20
seq1195 96.9 3e-15
>seq19977
Length=118669
Score = 159 bits (176), Expect = 3e-34
Identities = 193/263 (73%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769
|| || |||||||||||||| | || || ||| | | || || ||| |||||
Sbjct 57694 AAGTCTTCTGCCTTAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGA 57635
Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829
|| ||||| ||||| |||| || ||| || || ||||| | |||| |||||| | |
Sbjct 57634 AAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATG 57575
Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889
||||| ||||| | ||||| | |||||||| || | |||||| ||||| || || |||
Sbjct 57574 TGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATC 57515
Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949
|| || ||||| || || |||||||| || || || || || || || ||||| || ||
Sbjct 57514 ATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCA 57455
Query 29950 GACCTCTGGTAGAGCTGACACGA 29972
|||||||| |||||||| || ||
Sbjct 57454 GACCTCTGATAGAGCTGGCAAGA 57432
>seq15741
Length=12914
Score = 114 bits (126), Expect = 1e-20
Identities = 139/184 (76%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || ||||| ||||||||||||||||| || || || ||||||| ||
Sbjct 10734 CATATCTTTGTATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 10793
Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
||||| || || ||||| ||| ||| ||| |||| || || | || || || || |
Sbjct 10794 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 10852
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328
|||| ||||| || ||||| | ||||||||||||| ||||| || || || || || |
Sbjct 10853 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 10910
Query 30329 ACAG 30332
||||
Sbjct 10911 ACAG 10914
Score = 82.4 bits (90), Expect = 6e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 30320 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30379
||| |||||||||||||||||||| || | ||||| ||||||||||||||||| || |
Sbjct 12160 TGATGAACCACAGCAGCTCCTCCAGCACTCCTTTCCAGAAGACCCTCTTGGTCGTTAGCA 12219
Query 30380 GGGGAAACTG 30389
| ||||||||
Sbjct 12220 GTGGAAACTG 12229
>seq1195
Length=14407
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| |||||||||||||| |||| || || |||||| | | ||| | |||||| || ||
Sbjct 3095 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 3036
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || |||||||||||||||| | ||||| || |||
Sbjct 3035 ATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 2988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408268390546706
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |