Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq19977 159 3e-34 seq15741 114 1e-20 seq1195 96.9 3e-15 >seq19977 Length=118669 Score = 159 bits (176), Expect = 3e-34 Identities = 193/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769 || || |||||||||||||| | || || ||| | | || || ||| ||||| Sbjct 57694 AAGTCTTCTGCCTTAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGA 57635 Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829 || ||||| ||||| |||| || ||| || || ||||| | |||| |||||| | | Sbjct 57634 AAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATG 57575 Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889 ||||| ||||| | ||||| | |||||||| || | |||||| ||||| || || ||| Sbjct 57574 TGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATC 57515 Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949 || || ||||| || || |||||||| || || || || || || || ||||| || || Sbjct 57514 ATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCA 57455 Query 29950 GACCTCTGGTAGAGCTGACACGA 29972 |||||||| |||||||| || || Sbjct 57454 GACCTCTGATAGAGCTGGCAAGA 57432 >seq15741 Length=12914 Score = 114 bits (126), Expect = 1e-20 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || ||||| ||||||||||||||||| || || || ||||||| || Sbjct 10734 CATATCTTTGTATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 10793 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 10794 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 10852 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || ||||| | ||||||||||||| ||||| || || || || || | Sbjct 10853 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 10910 Query 30329 ACAG 30332 |||| Sbjct 10911 ACAG 10914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 30320 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30379 ||| |||||||||||||||||||| || | ||||| ||||||||||||||||| || | Sbjct 12160 TGATGAACCACAGCAGCTCCTCCAGCACTCCTTTCCAGAAGACCCTCTTGGTCGTTAGCA 12219 Query 30380 GGGGAAACTG 30389 | |||||||| Sbjct 12220 GTGGAAACTG 12229 >seq1195 Length=14407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 3095 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 3036 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || |||||||||||||||| | ||||| || ||| Sbjct 3035 ATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 2988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408268390546706