Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq51960 246 3e-60 seq66667 116 4e-21 >seq51960 Length=27294 Score = 246 bits (272), Expect = 3e-60 Identities = 652/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| |||| || || || |||||| || ||| || | Sbjct 10928 TGTGTCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 10869 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 10868 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 10812 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| |||| ||||| | ||| | Sbjct 10811 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGAGCACCTTTGGACACAT 10752 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 10751 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 10692 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||||||||| || || | || || | ||| | || |||||| Sbjct 10691 ACTTGT-CACTAGAAGAAACGGCACCTGGGACATCAGGGATTCTCTGAATTGTTGCCCAC 10633 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || || ||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 10632 AGGTACTCATCTGGACTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 10573 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || || || | |||| | || ||||| || || || || || || Sbjct 10572 CTTTCTAACACATGTTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 10513 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 10512 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 10453 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 10452 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCAGTTTCC 10393 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | |||| ||| | | || || || || |||| ||||| | Sbjct 10392 AAGCTGTTTTCACCTTTAAGCGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 10333 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | ||||| | |||||| | ||| ||||| || | || || || Sbjct 10332 GGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 10273 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||||||||||||||| | | |||| ||||| || || || ||||| Sbjct 10272 TCTTTCATGCAGTTAATATCTGCCTGCACCCTGTTCCATGAAGCATATACAACACTCTCT 10213 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| ||||| |||||| || | ||| || Sbjct 10212 AACTGGCTGGAAATAAAGACATTATCAAAACATGACACTATTCCCTTTACAG-CAGCAAA 10154 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 10153 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 10094 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 10093 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 10034 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || | || || | | | | ||| || | |||||| | || Sbjct 10033 TGGAAATTCTGCTTCTTCACTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGAA 9974 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 9973 GGAGGCACAGTCTGCTGTCATGTTAATATA 9944 >seq66667 Length=814 Score = 116 bits (128), Expect = 4e-21 Identities = 202/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || || || ||||| | ||| || |||||| ||| ||| || | Sbjct 7 GTCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCAGGTCGCCCGC 63 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | | |||||||| || |||| |||| |||| || ||||| | || || || Sbjct 64 CCCGTAGATGCAGACGGCGCGCTGGTGCCGGCCGGTGCAGGGTGGGTAGGGTGCGCCCTT 123 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 |||||| || |||||||||||| || | | || | || | |||||| || Sbjct 124 GCTGGTGTCACCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCATTCATGTCCGA 183 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | ||| |||| || |||| | ||| || ||||| || ||||| || | || || Sbjct 184 CAGCTGGTACTTGTCATTCTGGGGCATGGCGCCTGGAACACCAGGCATGCGGTTGAGAGT 243 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 |||||| | || || || |||||||| |||||||| | ||| || | ||||| Sbjct 244 GGCCCAGACATGCTCCTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576713252940720