Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq51960 246 3e-60
seq66667 116 4e-21
>seq51960
Length=27294
Score = 246 bits (272), Expect = 3e-60
Identities = 652/990 (66%), Gaps = 7/990 (1%)
Strand=Plus/Minus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| |||| || || || |||||| || ||| || |
Sbjct 10928 TGTGTCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 10869
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| |||| ||||||| || |||||| ||| || |
Sbjct 10868 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 10812
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || | || || || |||| || ||||| |||| ||||| | ||| |
Sbjct 10811 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGAGCACCTTTGGACACAT 10752
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
||||||| ||||||||||||| ||||||||||| | || | |||||| || ||||
Sbjct 10751 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 10692
Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
| |||| || || | ||||||||| || || | || || | ||| | || ||||||
Sbjct 10691 ACTTGT-CACTAGAAGAAACGGCACCTGGGACATCAGGGATTCTCTGAATTGTTGCCCAC 10633
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403
|||| || || || ||||| ||||| || | ||| || ||||||| ||| |||
Sbjct 10632 AGGTACTCATCTGGACTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 10573
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| || || || | |||| | || ||||| || || || || || ||
Sbjct 10572 CTTTCTAACACATGTTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 10513
Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
|| || | | ||| || | |||||| || ||||| | || |
Sbjct 10512 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 10453
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
| | | | || | || |||||||| || || | ||||| ||| || ||
Sbjct 10452 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCAGTTTCC 10393
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643
| ||||| |||| | |||| ||| | | || || || || |||| ||||| |
Sbjct 10392 AAGCTGTTTTCACCTTTAAGCGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 10333
Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
|||||||| | ||||| | |||||| | ||| ||||| || | || || ||
Sbjct 10332 GGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 10273
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
|| ||||||| ||||||||||||||||| | | |||| ||||| || || || |||||
Sbjct 10272 TCTTTCATGCAGTTAATATCTGCCTGCACCCTGTTCCATGAAGCATATACAACACTCTCT 10213
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823
| | |||| | |||||| ||||| ||||| ||||| |||||| || | ||| ||
Sbjct 10212 AACTGGCTGGAAATAAAGACATTATCAAAACATGACACTATTCCCTTTACAG-CAGCAAA 10154
Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
|| | || | | |||| ||| || || | ||| || | |||||||| || |||||
Sbjct 10153 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 10094
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
| || || | || || | |||||| || || |||| | ||| || ||||| || ||
Sbjct 10093 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 10034
Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002
||||| || | || || | || || | | | | ||| || | |||||| | ||
Sbjct 10033 TGGAAATTCTGCTTCTTCACTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGAA 9974
Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032
| |||| || |||||||| |||||
Sbjct 9973 GGAGGCACAGTCTGCTGTCATGTTAATATA 9944
>seq66667
Length=814
Score = 116 bits (128), Expect = 4e-21
Identities = 202/293 (69%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
|||||| || || || || || ||||| | ||| || |||||| ||| ||| || |
Sbjct 7 GTCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCAGGTCGCCCGC 63
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
|||| | | |||||||| || |||| |||| |||| || ||||| | || || ||
Sbjct 64 CCCGTAGATGCAGACGGCGCGCTGGTGCCGGCCGGTGCAGGGTGGGTAGGGTGCGCCCTT 123
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
|||||| || |||||||||||| || | | || | || | |||||| ||
Sbjct 124 GCTGGTGTCACCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCATTCATGTCCGA 183
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| ||| |||| || |||| | ||| || ||||| || ||||| || | || ||
Sbjct 184 CAGCTGGTACTTGTCATTCTGGGGCATGGCGCCTGGAACACCAGGCATGCGGTTGAGAGT 243
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
|||||| | || || || |||||||| |||||||| | ||| || | |||||
Sbjct 244 GGCCCAGACATGCTCCTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576713252940720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |