Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq26232 361 7e-95 seq16688 214 2e-50 seq37685 168 9e-37 seq20546 100 4e-16 seq46386 98.7 1e-15 >seq26232 Length=2247 Score = 361 bits (400), Expect = 7e-95 Identities = 1036/1579 (66%), Gaps = 33/1579 (2%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 || || ||||| || || || || ||||| || || ||||| | || ||| || Sbjct 2246 ATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAAGTG 2187 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 ||||| ||| | || ||||| || ||||| || || || || || ||||| || ||| Sbjct 2186 GAGATCATCGCCAACGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACCGAT 2127 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || || ||| | || ||||| || || || ||| ||||||||||||| ||| ||| Sbjct 2126 ACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAACACT 2067 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 ||||||| || |||||||| || || ||||||| | || | ||| || | || Sbjct 2066 ATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGGCTGAC 2007 Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAATGT 195600 || ||| ||||| | | || || || | ||||| ||||| | | | | || Sbjct 2006 ATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGC----AAGCCCAAGGTGCAAGT 1951 Query 195601 TGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTTGA 195659 || | | ||||||| ||| | || |||| || || || || ||||| | | Sbjct 1950 GGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCCTTA 1892 Query 195660 TTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGA 195719 ||||||||||||| ||| || | | |||| | ||| | |||| ||| | | Sbjct 1891 CCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTTATCA 1832 Query 195720 CTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTG 195779 | || || |||||||||| ||| || ||||| ||||| || || ||||||| | || Sbjct 1831 CAGTGCCCGCTTACTTCAATGACTCCCAACGCCAGGCCACCAAAGACGCTGGCACCATCA 1772 Query 195780 CGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839 | || || ||| | | ||||||||||| || ||||| ||||| || || ||||| Sbjct 1771 CTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGGCT 1712 Query 195840 TGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 |||||||||| | || | ||| || || || | |||||||| | || || | Sbjct 1711 TGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGG 1652 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 | || |||||||| || | || | || || | ||| || || || || ||| | || | Sbjct 1651 GCACTTTTGATGTGTCCATCCTTACCATCGAGGATGGCATCTTTGAGGTGAAGTCCACAG 1592 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG 196013 ||||||| || ||||| ||||| || || || || || | | ||||| | Sbjct 1591 CTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGG 1532 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073 | || ||| || ||| | ||| || ||| |||| || | || | | |||| Sbjct 1531 AAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGCGGC 1472 Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAACAATGG 196130 | | || || ||||| | || || || |||||| || || ||| ||| | | Sbjct 1471 TGCGTACGGCTTGTGAGAGGGCGAAGCGCACTCTCAGCTCCTCCACG---CAAGCTAGCA 1415 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 ||||||| || || | | || || ||||||||||| || | ||||| ||||| || | Sbjct 1414 TTGAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCTCGCT 1355 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 | || ||| | || ||||| | || | |||| || || || | | || | Sbjct 1354 TCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCCCTGC 1295 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||| || ||| | || ||| || | | || ||||| || ||||| || || || | Sbjct 1294 GTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCCACTC 1235 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 |||| || ||||| ||| || |||| |||||||||| ||||| | ||||| | Sbjct 1234 GTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGA 1175 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 |||||||| ||||| || ||||| || ||||| ||||| ||||| ||||| |||| Sbjct 1174 GCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTGCAGGCAGCTAT--CCTCAT 1117 Query 196431 GTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 | | ||||| | | || || || ||||| ||||| | ||||| | || | |||| Sbjct 1116 G-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCC 1058 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 |||| | || ||||| ||||| || ||||| | || | | ||||| || |||| Sbjct 1057 TGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGCAACACCACCATTC 998 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATT 196606 | || || | || ||| | || || || || || || | || |||| | | Sbjct 997 CCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GTGTCCTGGTC 939 Query 196607 CAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663 || || || || | |||| ||| || | ||||| ||| | | || || | || Sbjct 938 CAGGTGTACGAGGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGGCAAGTTT 882 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | ||||| || || | |||||| | || || || ||||| | || || || Sbjct 881 GACCTAACGGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTGAC 822 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 || || || || || || || ||||||| |||| ||||||| | || || | Sbjct 821 ATTGATGCCAACGGTATCCTGAACGTCAGCGCTGTGGACAAGAGCACGGGTAAGGAGAAT 762 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 ||||| || |||||||||||||| || ||| ||||| || || || |||||||| Sbjct 761 AAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATCGACCGTATGGTG 702 Query 196844 CAAGATGCGGAAAAGTACA 196862 ||||| || || || |||| Sbjct 701 CAAGAAGCAGAGAAATACA 683 >seq16688 Length=7170 Score = 214 bits (236), Expect = 2e-50 Identities = 374/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 195865 AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGA 195924 |||||| | |||||||| ||||| ||||| || |||||||| ||| |||| | |||||| Sbjct 1386 AAATGTTCTTATCTTTGACCTCGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGA 1445 Query 195925 AGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTT 195984 || ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| || Sbjct 1446 AGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTT 1505 Query 195985 CGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATAT 196044 ||| || | || || || || ||||||| || ||| | |||||||| || Sbjct 1506 TGATAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAACGCAAGCACAAGAAAGACAT 1565 Query 196045 TTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104 || || || || ||||||| || | || || || || ||||| || || || Sbjct 1566 CAGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGTACCGCCTGCGAGCGTGCGAAGCGTAC 1625 Query 196105 TCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTT 196164 ||| || || | | || | | |||| |||||||| | | ||| || |||||||| Sbjct 1626 TCTGTCGTCCAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTT 1685 Query 196165 CTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTG 196224 ||| ||| | || ||| | || || ||||||||| | ||| |||| |||| | | Sbjct 1686 CTACACATCCATCACCAGAGCTCGCTTTGAAGAGCTGAACGCTGACCTGTTCCG---TGG 1742 Query 196225 TA---TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGA 196281 || |||| ||||| ||| | | || || || || ||| |||| || || || | | Sbjct 1743 TACCCTGGATCCTGTGGAAAAGGCCCTGCGAGATGCCAAGCTGGACAAATCGCAGATCCA 1802 Query 196282 TGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG 196341 ||| || ||||| || || || || || ||||| || ||||| || | |||| Sbjct 1803 TGACATCGTCCTGGTTGGTGGGTCTACTCGTATCCCAAAGATCCAGAAACTGCTGCAGGA 1862 Query 196342 CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGG 196401 ||||||||| ||||| | ||||| | ||||| || |||||||| || |||||||| Sbjct 1863 TTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTATGG 1922 Query 196402 TGC 196404 ||| Sbjct 1923 TGC 1925 Score = 113 bits (124), Expect = 6e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || ||||||||||| || || |||| ||| || || || ||||| ||||| || ||| Sbjct 1143 GCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATGCT 1202 Query 195770 GCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | ||||| ||||| || ||| || ||||||||||||| || ||||| ||||| || Sbjct 1203 GGAACCATTGCAGGTCTCAA-TGTACTGCGAATTATCAATGAGCCGACAGCTGCTGCCAT 1261 Query 195829 TGCTTATGGTCTGGACAAGAA 195849 || |||||||||||||| || Sbjct 1262 AGCCTATGGTCTGGACAAAAA 1282 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | | || | ||||| ||| | | || || | || || | Sbjct 2745 GTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 2803 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 2804 GACTGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 2863 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| ||||||| | ||||| Sbjct 2864 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 2923 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| || ||||| ||||| Sbjct 2924 CACGATAACAAATGATAAGGG 2944 >seq37685 Length=54521 Score = 168 bits (186), Expect = 9e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| | | Sbjct 54404 TGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGTG 54345 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||| || || || | || |||||||| || || |||||||||||||| |||||||||| Sbjct 54344 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 54285 Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042 | | || || |||||||| || ||||| |||||||| ||||| | | ||||||||| Sbjct 54284 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTTGTACCTTGTCCGATTACAACA 54225 Query 172043 TTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | | ||||| || || || || ||||| || Sbjct 54224 TCTAGAAGGAATCCACCCTCCATCTTGTCCT 54194 >seq20546 Length=6288 Score = 100 bits (110), Expect = 4e-16 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||| || ||||| || |||||||||| ||| ||| || || || || Sbjct 5198 AACGGCTGCTGCCATCGCTTACGGGCTGGACAAGAGAGAGGGCGA-GAAGAACATCC-TT 5141 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| | |||||||| |||||||||||||| || |||| ||||| ||| | Sbjct 5140 G-TGTTTGACTTGGGTGGTGGAACGTTTGATGTCTCCCTCCTCACCATTGACAATGGAGT 5082 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||| ||||| || ||||| ||||| || || Sbjct 5081 CTTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 5028 >seq46386 Length=15654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 15228 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 15169 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| ||||| ||||||| Sbjct 15168 CACACTGTCTGACTACAATATTCAAAA 15142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657285767159840