Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq26232 361 7e-95
seq16688 214 2e-50
seq37685 168 9e-37
seq20546 100 4e-16
seq46386 98.7 1e-15
>seq26232
Length=2247
Score = 361 bits (400), Expect = 7e-95
Identities = 1036/1579 (66%), Gaps = 33/1579 (2%)
Strand=Plus/Minus
Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361
|| || ||||| || || || || ||||| || || ||||| | || ||| ||
Sbjct 2246 ATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAAGTG 2187
Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421
||||| ||| | || ||||| || ||||| || || || || || ||||| || |||
Sbjct 2186 GAGATCATCGCCAACGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACCGAT 2127
Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481
| || || ||| | || ||||| || || || ||| ||||||||||||| ||| |||
Sbjct 2126 ACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAACACT 2067
Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541
||||||| || |||||||| || || ||||||| | || | ||| || | ||
Sbjct 2066 ATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGGCTGAC 2007
Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAATGT 195600
|| ||| ||||| | | || || || | ||||| ||||| | | | | ||
Sbjct 2006 ATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGC----AAGCCCAAGGTGCAAGT 1951
Query 195601 TGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTTGA 195659
|| | | ||||||| ||| | || |||| || || || || ||||| | |
Sbjct 1950 GGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCCTTA 1892
Query 195660 TTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGA 195719
||||||||||||| ||| || | | |||| | ||| | |||| ||| | |
Sbjct 1891 CCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTTATCA 1832
Query 195720 CTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTG 195779
| || || |||||||||| ||| || ||||| ||||| || || ||||||| | ||
Sbjct 1831 CAGTGCCCGCTTACTTCAATGACTCCCAACGCCAGGCCACCAAAGACGCTGGCACCATCA 1772
Query 195780 CGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839
| || || ||| | | ||||||||||| || ||||| ||||| || || |||||
Sbjct 1771 CTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGGCT 1712
Query 195840 TGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893
|||||||||| | || | ||| || || || | |||||||| | || || |
Sbjct 1711 TGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGG 1652
Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953
| || |||||||| || | || | || || | ||| || || || || ||| | || |
Sbjct 1651 GCACTTTTGATGTGTCCATCCTTACCATCGAGGATGGCATCTTTGAGGTGAAGTCCACAG 1592
Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG 196013
||||||| || ||||| ||||| || || || || || | | ||||| |
Sbjct 1591 CTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGG 1532
Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073
| || ||| || ||| | ||| || ||| |||| || | || | | ||||
Sbjct 1531 AAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGCGGC 1472
Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAACAATGG 196130
| | || || ||||| | || || || |||||| || || ||| ||| | |
Sbjct 1471 TGCGTACGGCTTGTGAGAGGGCGAAGCGCACTCTCAGCTCCTCCACG---CAAGCTAGCA 1415
Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190
||||||| || || | | || || ||||||||||| || | ||||| ||||| || |
Sbjct 1414 TTGAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCTCGCT 1355
Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250
| || ||| | || ||||| | || | |||| || || || | | || |
Sbjct 1354 TCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCCCTGC 1295
Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310
|||| || ||| | || ||| || | | || ||||| || ||||| || || || |
Sbjct 1294 GTGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCCACTC 1235
Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370
|||| || ||||| ||| || |||| |||||||||| ||||| | ||||| |
Sbjct 1234 GTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGA 1175
Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430
|||||||| ||||| || ||||| || ||||| ||||| ||||| ||||| ||||
Sbjct 1174 GCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTGCAGGCAGCTAT--CCTCAT 1117
Query 196431 GTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487
| | ||||| | | || || || ||||| ||||| | ||||| | || | ||||
Sbjct 1116 G-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCC 1058
Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547
|||| | || ||||| ||||| || ||||| | || | | ||||| || ||||
Sbjct 1057 TGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGCAACACCACCATTC 998
Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATT 196606
| || || | || ||| | || || || || || || | || |||| | |
Sbjct 997 CCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GTGTCCTGGTC 939
Query 196607 CAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663
|| || || || | |||| ||| || | ||||| ||| | | || || | ||
Sbjct 938 CAGGTGTACGAGGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGGCAAGTTT 882
Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723
|| | ||||| || || | |||||| | || || || ||||| | || || ||
Sbjct 881 GACCTAACGGGCATCCCCCCAGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTGAC 822
Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783
|| || || || || || || ||||||| |||| ||||||| | || || |
Sbjct 821 ATTGATGCCAACGGTATCCTGAACGTCAGCGCTGTGGACAAGAGCACGGGTAAGGAGAAT 762
Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843
||||| || |||||||||||||| || ||| ||||| || || || ||||||||
Sbjct 761 AAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATCGACCGTATGGTG 702
Query 196844 CAAGATGCGGAAAAGTACA 196862
||||| || || || ||||
Sbjct 701 CAAGAAGCAGAGAAATACA 683
>seq16688
Length=7170
Score = 214 bits (236), Expect = 2e-50
Identities = 374/543 (69%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 195865 AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGA 195924
|||||| | |||||||| ||||| ||||| || |||||||| ||| |||| | ||||||
Sbjct 1386 AAATGTTCTTATCTTTGACCTCGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGA 1445
Query 195925 AGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTT 195984
|| ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| ||
Sbjct 1446 AGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTT 1505
Query 195985 CGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATAT 196044
||| || | || || || || ||||||| || ||| | |||||||| ||
Sbjct 1506 TGATAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAACGCAAGCACAAGAAAGACAT 1565
Query 196045 TTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104
|| || || || ||||||| || | || || || || ||||| || || ||
Sbjct 1566 CAGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGTACCGCCTGCGAGCGTGCGAAGCGTAC 1625
Query 196105 TCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTT 196164
||| || || | | || | | |||| |||||||| | | ||| || ||||||||
Sbjct 1626 TCTGTCGTCCAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTT 1685
Query 196165 CTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTG 196224
||| ||| | || ||| | || || ||||||||| | ||| |||| |||| | |
Sbjct 1686 CTACACATCCATCACCAGAGCTCGCTTTGAAGAGCTGAACGCTGACCTGTTCCG---TGG 1742
Query 196225 TA---TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGA 196281
|| |||| ||||| ||| | | || || || || ||| |||| || || || | |
Sbjct 1743 TACCCTGGATCCTGTGGAAAAGGCCCTGCGAGATGCCAAGCTGGACAAATCGCAGATCCA 1802
Query 196282 TGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG 196341
||| || ||||| || || || || || ||||| || ||||| || | ||||
Sbjct 1803 TGACATCGTCCTGGTTGGTGGGTCTACTCGTATCCCAAAGATCCAGAAACTGCTGCAGGA 1862
Query 196342 CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGG 196401
||||||||| ||||| | ||||| | ||||| || |||||||| || ||||||||
Sbjct 1863 TTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCTTATGG 1922
Query 196402 TGC 196404
|||
Sbjct 1923 TGC 1925
Score = 113 bits (124), Expect = 6e-20
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
|| || ||||||||||| || || |||| ||| || || || ||||| ||||| || |||
Sbjct 1143 GCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATGCT 1202
Query 195770 GCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828
| | ||||| ||||| || ||| || ||||||||||||| || ||||| ||||| ||
Sbjct 1203 GGAACCATTGCAGGTCTCAA-TGTACTGCGAATTATCAATGAGCCGACAGCTGCTGCCAT 1261
Query 195829 TGCTTATGGTCTGGACAAGAA 195849
|| |||||||||||||| ||
Sbjct 1262 AGCCTATGGTCTGGACAAAAA 1282
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668
||||||||||||||||| | | || | ||||| ||| | | || || | || || |
Sbjct 2745 GTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 2803
Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728
||| || ||||| |||| ||||||||||| || |||||| | || ||| ||||| ||
Sbjct 2804 GACTGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 2863
Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788
|| ||||| || || || || | |||| ||| ||| ||||||| | |||||
Sbjct 2864 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 2923
Query 196789 TGTGATTACCAATGACAAGGG 196809
||| || ||||| |||||
Sbjct 2924 CACGATAACAAATGATAAGGG 2944
>seq37685
Length=54521
Score = 168 bits (186), Expect = 9e-37
Identities = 164/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922
|||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| | |
Sbjct 54404 TGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGTG 54345
Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982
|||| || || || | || |||||||| || || |||||||||||||| ||||||||||
Sbjct 54344 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 54285
Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042
| | || || |||||||| || ||||| |||||||| ||||| | | |||||||||
Sbjct 54284 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTTGTACCTTGTCCGATTACAACA 54225
Query 172043 TTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
| | ||||| || || || || ||||| ||
Sbjct 54224 TCTAGAAGGAATCCACCCTCCATCTTGTCCT 54194
>seq20546
Length=6288
Score = 100 bits (110), Expect = 4e-16
Identities = 129/174 (74%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
||| || ||||| || ||||| || |||||||||| ||| ||| || || || ||
Sbjct 5198 AACGGCTGCTGCCATCGCTTACGGGCTGGACAAGAGAGAGGGCGA-GAAGAACATCC-TT 5141
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| | ||||| | |||||||| |||||||||||||| || |||| ||||| ||| |
Sbjct 5140 G-TGTTTGACTTGGGTGGTGGAACGTTTGATGTCTCCCTCCTCACCATTGACAATGGAGT 5082
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| ||||| ||||||| |||||| ||||| || ||||| ||||| || ||
Sbjct 5081 CTTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 5028
>seq46386
Length=15654
Score = 98.7 bits (108), Expect = 1e-15
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||||||||| || |||||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 15228 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 15169
Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049
|| || |||| ||||| |||||||
Sbjct 15168 CACACTGTCTGACTACAATATTCAAAA 15142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657285767159840
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