Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq25834 178 2e-38 seq49468 176 5e-38 seq13459 176 5e-38 seq53660 170 2e-36 seq3344 138 1e-26 seq38384 129 7e-24 seq23052 125 9e-23 seq28096 86.0 8e-11 >seq25834 Length=1395 Score = 178 bits (196), Expect = 2e-38 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || |||||||| ||||||||||| |||| | ||| ||| ||||||||| |||||||| Sbjct 1122 AGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCC 1063 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || ||||||| | ||||||| |||| ||||||||||||||||||||||||| Sbjct 1062 AGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCATGATG 1003 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | |||| |||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 1002 CCCATGGCCTTGGACGAGATGCCCATGTCGGGGTGCACCTGCTTCAGCACCTTGTACATG 943 Query 1254549 AACGACGAGTA 1254559 | |||||| Sbjct 942 TAGATCGAGTA 932 >seq49468 Length=1811 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 1360 GCTTGGCCAGCGCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1419 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1420 TGGTGGAGCGCTTGTTGTAGTGCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1479 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1480 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1539 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1540 GCACCTGCTTCAGCACCTTGTA 1561 >seq13459 Length=5818 Score = 176 bits (194), Expect = 5e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||| ||| Sbjct 1031 GCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGATGGTG 1090 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||||||||| || ||||||| | ||||||| |||| |||||| Sbjct 1091 GAGCGCTTGTTGTAGTGCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCG 1150 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | |||| ||||||||| ||||||||||||| Sbjct 1151 TTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACC 1210 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 1211 TGCTTCAGCACCTTGTA 1227 >seq53660 Length=1098 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || ||||| || ||||||||||| |||| | || Sbjct 446 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACAGCCGTCTGGATCTCCCGCGAGGTGA 505 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 506 TGGTGGAGCGCTTGTTGTAGTGCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 565 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 566 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCCGTGTCGGGGT 625 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||||| ||||||||||| Sbjct 626 TCACCTGCTTCAGCACCTTGTA 647 >seq3344 Length=2059 Score = 138 bits (152), Expect = 1e-26 Identities = 156/213 (73%), Gaps = 16/213 (8%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||| ||| Sbjct 566 GCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTG 507 Query 1254408 TTGCGCTTGTTCGAGTGCGC----------------CAGACGGCCGGCCTCGGTGCCGAT 1254451 ||||||||| ||||||| ||| || ||||||| | |||| Sbjct 506 GAGCGCTTGTTGTAGTGCGCTGTTGTTGTGGCGCCCCAGCCGAGAGGCCTCGCCGGCGAT 447 Query 1254452 GCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511 ||| |||| ||||||||||| ||||||||||||| ||| | |||| |||||||| Sbjct 446 GCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCC 387 Query 1254512 CACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||||| |||||||||| ||||||||||| Sbjct 386 CGTGTCGGGGGGCACCTGCTTCAGCACCTTGTA 354 >seq38384 Length=3273 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || | ||| || ||||||||||| | || | || Sbjct 2711 GCTTGGCCAGCTCACCGGGCAGCAGGAGCCTCACAGCTGTCTGGATCTCCCTCGAGGTGA 2770 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||| ||||| ||| || || ||||||| |||| | Sbjct 2771 TGGTGGAGCGTTTGTTGTAGTGAGCCAGGCGGGATGCTTCACCCGCGATGCGCTCGAAGA 2830 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||| || |||||||| Sbjct 2831 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATACCGGTGTCGGGGT 2890 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 2891 GGACCTGCTTCAGCACCTTGTAGA 2914 >seq23052 Length=26828 Score = 125 bits (138), Expect = 9e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 13690 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGA 13749 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || | || || || | | Sbjct 13750 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATACGCTCAAAGA 13809 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 13810 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 13869 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 13870 GGACCTGCTTCAGCACCTTGTAGA 13893 >seq28096 Length=3030 Score = 86.0 bits (94), Expect = 8e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | || |||| | | |||| | Sbjct 1328 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCAGGTCTCACCCCCACCGAGTTC 1387 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || || ||||||||||| ||| ||||||| ||||||||||| |||||| Sbjct 1388 TTCTTCCACGCCATGGGTGGGCGCGAGGGTCTCATCGACACCGCCGTCAAGACAGCCGAG 1447 Query 509156 ACGGG 509160 || || Sbjct 1448 ACCGG 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101384660298674