Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq25834 178 2e-38
seq49468 176 5e-38
seq13459 176 5e-38
seq53660 170 2e-36
seq3344 138 1e-26
seq38384 129 7e-24
seq23052 125 9e-23
seq28096 86.0 8e-11
>seq25834
Length=1395
Score = 178 bits (196), Expect = 2e-38
Identities = 154/191 (81%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428
|| |||||||| ||||||||||| |||| | ||| ||| ||||||||| ||||||||
Sbjct 1122 AGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCC 1063
Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488
|| || ||||||| | ||||||| |||| |||||||||||||||||||||||||
Sbjct 1062 AGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCATGATG 1003
Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||| | |||| |||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 1002 CCCATGGCCTTGGACGAGATGCCCATGTCGGGGTGCACCTGCTTCAGCACCTTGTACATG 943
Query 1254549 AACGACGAGTA 1254559
| ||||||
Sbjct 942 TAGATCGAGTA 932
>seq49468
Length=1811
Score = 176 bits (194), Expect = 5e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 1360 GCTTGGCCAGCGCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1419
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 1420 TGGTGGAGCGCTTGTTGTAGTGCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1479
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1480 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1539
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1540 GCACCTGCTTCAGCACCTTGTA 1561
>seq13459
Length=5818
Score = 176 bits (194), Expect = 5e-38
Identities = 157/197 (80%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||| |||
Sbjct 1031 GCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGATGGTG 1090
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
||||||||| |||||||||| || ||||||| | ||||||| |||| ||||||
Sbjct 1091 GAGCGCTTGTTGTAGTGCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCG 1150
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
||||| ||||||||||||| ||| | |||| ||||||||| |||||||||||||
Sbjct 1151 TTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACC 1210
Query 1254528 TGCTTGAGCACCTTGTA 1254544
||||| |||||||||||
Sbjct 1211 TGCTTCAGCACCTTGTA 1227
>seq53660
Length=1098
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || ||||| || ||||||||||| |||| | ||
Sbjct 446 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACAGCCGTCTGGATCTCCCGCGAGGTGA 505
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| |
Sbjct 506 TGGTGGAGCGCTTGTTGTAGTGCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 565
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 566 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCCGTGTCGGGGT 625
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||| |||||||||||
Sbjct 626 TCACCTGCTTCAGCACCTTGTA 647
>seq3344
Length=2059
Score = 138 bits (152), Expect = 1e-26
Identities = 156/213 (73%), Gaps = 16/213 (8%)
Strand=Plus/Minus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||| |||
Sbjct 566 GCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTG 507
Query 1254408 TTGCGCTTGTTCGAGTGCGC----------------CAGACGGCCGGCCTCGGTGCCGAT 1254451
||||||||| ||||||| ||| || ||||||| | ||||
Sbjct 506 GAGCGCTTGTTGTAGTGCGCTGTTGTTGTGGCGCCCCAGCCGAGAGGCCTCGCCGGCGAT 447
Query 1254452 GCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511
||| |||| ||||||||||| ||||||||||||| ||| | |||| ||||||||
Sbjct 446 GCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCC 387
Query 1254512 CACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
| ||||||| |||||||||| |||||||||||
Sbjct 386 CGTGTCGGGGGGCACCTGCTTCAGCACCTTGTA 354
>seq38384
Length=3273
Score = 129 bits (142), Expect = 7e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | || | ||| || ||||||||||| | || | ||
Sbjct 2711 GCTTGGCCAGCTCACCGGGCAGCAGGAGCCTCACAGCTGTCTGGATCTCCCTCGAGGTGA 2770
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||| ||||| |||| ||||| ||| || || ||||||| |||| |
Sbjct 2771 TGGTGGAGCGTTTGTTGTAGTGAGCCAGGCGGGATGCTTCACCCGCGATGCGCTCGAAGA 2830
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||| || ||||||||
Sbjct 2831 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATACCGGTGTCGGGGT 2890
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 2891 GGACCTGCTTCAGCACCTTGTAGA 2914
>seq23052
Length=26828
Score = 125 bits (138), Expect = 9e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||| ||||| || | | ||
Sbjct 13690 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGA 13749
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | || ||||| ||| ||| || | || || || | |
Sbjct 13750 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATACGCTCAAAGA 13809
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| |||||||| |||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 13810 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 13869
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 13870 GGACCTGCTTCAGCACCTTGTAGA 13893
>seq28096
Length=3030
Score = 86.0 bits (94), Expect = 8e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | || |||| | | |||| |
Sbjct 1328 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCAGGTCTCACCCCCACCGAGTTC 1387
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || || ||||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct 1388 TTCTTCCACGCCATGGGTGGGCGCGAGGGTCTCATCGACACCGCCGTCAAGACAGCCGAG 1447
Query 509156 ACGGG 509160
|| ||
Sbjct 1448 ACCGG 1452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6101384660298674
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |