Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13459 223 5e-52 seq53660 219 7e-51 seq49468 214 3e-49 seq25834 194 3e-43 seq3344 190 3e-42 seq23052 183 5e-40 seq38384 161 2e-33 seq28096 91.5 2e-12 >seq13459 Length=5818 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| | ||||| |||||| ||| Sbjct 987 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACAGCGTGCTTTGCCAGCTCGCCGGGCA 1046 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1047 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGGGATGGTGGAGCGCTTGTTGTAGT 1106 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 1107 GCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 1166 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1167 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1226 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || |||||| Sbjct 1227 ACACATAGATCGAGTA 1242 >seq53660 Length=1098 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 407 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 466 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||||||||| || | | ||| ||| ||||||||| | Sbjct 467 GCAGGAGCCGCACAGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 526 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 527 GCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 586 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||| ||||||||| |||||||||| Sbjct 587 TGATGCCCATGGCCTTGGATGAGATGCCCGTGTCGGGGTTCACCTGCTTCAGCACCTTGT 646 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || |||||| Sbjct 647 ACACATAGATCGAGTA 662 >seq49468 Length=1811 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| ||||| |||||| ||||||| ||||| ||| Sbjct 1321 TGTATTTGGTGACAGCCTTGGTTCCCTCGGAGACAGCGTGCTTGGCCAGCGCGCCGGGCA 1380 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1381 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1440 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 1441 GCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 1500 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1501 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1560 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 1561 ACACGGAGATCGAGTA 1576 >seq25834 Length=1395 Score = 194 bits (214), Expect = 3e-43 Identities = 187/241 (78%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||| ||||||| |||||||||||||| ||||| |||||| ||| ||| || Sbjct 1175 TGTACGTGGTGACAGCCTTGGTACCCTCAGAGACAGCGTGCTTGGGCAG---------CA 1125 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || | |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1124 GGAGC---CGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1068 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||||| | ||||||| |||| |||||||||||||||||||||| Sbjct 1067 GCGCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 1008 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 1007 TGATGCCCATGGCCTTGGACGAGATGCCCATGTCGGGGTGCACCTGCTTCAGCACCTTGT 948 Query 1485710 A 1485710 | Sbjct 947 A 947 >seq3344 Length=2059 Score = 190 bits (210), Expect = 3e-42 Identities = 204/272 (75%), Gaps = 16/272 (6%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| | ||||| |||||| ||| Sbjct 610 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACAGCGTGCTTTGCCAGCTCGCCGGGCA 551 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| ||| Sbjct 550 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 491 Query 1485588 GCGCG--------------CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1485633 |||| |||| || ||||||| | ||||||| |||| |||||| Sbjct 490 GCGCTGTTGTTGTGGCGCCCCAGCCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCG 431 Query 1485634 TTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACC 1485693 ||||| |||||||||||||| ||| | ||| ||||||||| ||||||| ||||| Sbjct 430 TTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGGGCACC 371 Query 1485694 TGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 ||||| ||||||||||| || || |||||| Sbjct 370 TGCTTCAGCACCTTGTACACGTAGATCGAGTA 339 >seq23052 Length=26828 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| |||||||||||||||||| ||||||| || || | | Sbjct 13651 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCCGGGA 13710 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 13711 GCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 13770 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | || || || | ||||| |||||||| ||||||| Sbjct 13771 GGGCCAGGCGGGAGGCTTCTCCAGCAATACGCTCAAAGATGTCATTGACAAAGGAGTTCA 13830 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 13831 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 13890 Query 1485710 AAAC 1485713 | || Sbjct 13891 AGAC 13894 >seq38384 Length=3273 Score = 161 bits (178), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| || || ||||| |||||| ||||||| || ||| ||| Sbjct 2672 TGTATTTGGTGACAGCCTTGGTCCCTTCCGAGACAGCGTGCTTGGCCAGCTCACCGGGCA 2731 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||| || ||||||||||| | | | ||| ||| ||| ||||| | Sbjct 2732 GCAGGAGCCTCACAGCTGTCTGGATCTCCCTCGAGGTGATGGTGGAGCGTTTGTTGTAGT 2791 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| || || ||||||| |||| ||||||||||| || ||||||| Sbjct 2792 GAGCCAGGCGGGATGCTTCACCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2851 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||| |||||||| |||||||||| Sbjct 2852 TGATGCCCATGGCCTTGGAGGAGATACCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2911 Query 1485710 AAAC 1485713 | || Sbjct 2912 AGAC 2915 >seq28096 Length=3030 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | || |||| | | |||| | Sbjct 1328 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCAGGTCTCACCCCCACCGAGTTC 1387 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || || ||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 1388 TTCTTCCACGCCATGGGTGGGCGCGAGGGTCTCATCGACACCGCCGTCAAGACAGCCGAG 1447 Query 431142 ACGGG 431146 || || Sbjct 1448 ACCGG 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908787203033558