Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq51960 149 7e-31 seq66667 84.2 3e-11 >seq51960 Length=27294 Score = 149 bits (164), Expect = 7e-31 Identities = 547/850 (64%), Gaps = 30/850 (4%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || || || || || ||||| Sbjct 10839 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 10780 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||| || || |||| |||||||| || ||||| Sbjct 10779 GGTGGGTAGGGAGCACCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTG 10720 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || |||||||||| |||| || | ||||| || || || Sbjct 10719 GCCAGTGCATTCATGTCAGAAACATCGTACTTGT-CACTAGAAGAAACGGCACCTGGGAC 10661 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | | || | |||||| | || |||||||||| || |||||||| || || || || | Sbjct 10660 ATCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGACTGTAAGTGTCTTTTGC 10601 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGAC----- 162453 |||||| ||||||| | | |||| | | | ||| | | || || Sbjct 10600 CCACTCAATGAACT---TAAGTATTTTGCTGCTT----TCTAACACATGTTCTACAAATC 10548 Query 162454 --CTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCT 162511 ||| | || | ||| || || ||||||||||| | || | | | ||| || | | Sbjct 10547 TTCTGCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTT 10488 Query 162512 CTTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACC 162571 ||||||| || ||||| || | || || | | | | || || |||||| Sbjct 10487 GTTTGTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACC 10428 Query 162572 TGGCCATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAG 162627 | | ||| || || || | ||| || || | ||||| ||| | Sbjct 10427 TTACTTCTTTA----TAAACAGGCATTTTTTCAGTTTCCAAGCTGTTTTCACCTTTAAGC 10372 Query 162628 GCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGA 162687 || || | | || || || | |||||||| | |||||||| |||||||||| Sbjct 10371 GCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCGCAGAGG 10312 Query 162688 TTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCG 162747 || || | |||||||| || || || ||| ||||| | | ||||| | ||| Sbjct 10311 TTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATATCT 10252 Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807 ||||| || | |||| || || || || || ||||| ||| ||| | ||||||| Sbjct 10251 GCCTGCACCCTGTTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACA 10192 Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTC 162864 || || ||||| || ||||| ||| | || || || | || | || || ||| Sbjct 10191 TTATCAAAACATGACACTATTCCCTTTACAGC-AGCAAAAAAAGATTCTGGAGACTTTT- 10134 Query 162865 CTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCG 162924 | || || || | |||||| | |||||||||||| ||||| | || || | ||| || Sbjct 10133 -TGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCA 10075 Query 162925 AACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCG 162984 | |||||| || || || | ||||| || || || || || || || || || || || Sbjct 10074 AGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCA 10015 Query 162985 CGACTGAGAG 162994 | ||||||| Sbjct 10014 CTGCTGAGAG 10005 >seq66667 Length=814 Score = 84.2 bits (92), Expect = 3e-11 Identities = 206/307 (67%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 162630 CTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689 |||||| ||| || ||||| |||||||| | || || |||||||| ||| || Sbjct 511 CTTCAGGGCACGGACGATCTCGGCGTTGGTCTTGATAGGGAAATCGGTGCCACAGGTGTT 570 Query 162690 AATAACATATTTCCACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCG 162747 | ||||| ||| | || | | | || | | ||| ||||| | ||||| || ||| Sbjct 571 GAGGACATAGCGCCA--TGACACCGGGCTCTGCAACAGGTCCTGCATGCAGTTGAGGTCG 628 Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807 ||||| | || ||| || || || || || | |||| | | || ||||||||| Sbjct 629 GCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCCAGGCGGCTCGCCACAAAGACA 688 Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCC 162865 ||| ||| || | || || || ||||||| ||| || | || | || | Sbjct 689 TTGGGGAAGCAGGCCACGATGGCCCGCACGGCCGCCTGGAAGGCAGCTGGG--GACTTGC 746 Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925 |||| | ||| |||||||| | ||||| ||||||||||||| || ||| | | ||| | Sbjct 747 TATCAATGTGGACGCAGTAAATGTTCTGGGGGGCGTAGATGGACCGCAGGAGCCGCTCAA 806 Query 162926 ACATCTC 162932 ||||||| Sbjct 807 ACATCTC 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577924989891200