Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq51960 149 7e-31
seq66667 84.2 3e-11
>seq51960
Length=27294
Score = 149 bits (164), Expect = 7e-31
Identities = 547/850 (64%), Gaps = 30/850 (4%)
Strand=Plus/Minus
Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219
||||| || || || || || || || || || || || || || || || |||||
Sbjct 10839 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 10780
Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279
|| || || | || || | | |||||| || || |||| |||||||| || |||||
Sbjct 10779 GGTGGGTAGGGAGCACCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTG 10720
Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338
| | || | |||||| || |||||||||| |||| || | ||||| || || ||
Sbjct 10719 GCCAGTGCATTCATGTCAGAAACATCGTACTTGT-CACTAGAAGAAACGGCACCTGGGAC 10661
Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398
| | || | |||||| | || |||||||||| || |||||||| || || || || |
Sbjct 10660 ATCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGACTGTAAGTGTCTTTTGC 10601
Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGAC----- 162453
|||||| ||||||| | | |||| | | | ||| | | || ||
Sbjct 10600 CCACTCAATGAACT---TAAGTATTTTGCTGCTT----TCTAACACATGTTCTACAAATC 10548
Query 162454 --CTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCT 162511
||| | || | ||| || || ||||||||||| | || | | | ||| || | |
Sbjct 10547 TTCTGCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTT 10488
Query 162512 CTTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACC 162571
||||||| || ||||| || | || || | | | | || || ||||||
Sbjct 10487 GTTTGTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACC 10428
Query 162572 TGGCCATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAG 162627
| | ||| || || || | ||| || || | ||||| ||| |
Sbjct 10427 TTACTTCTTTA----TAAACAGGCATTTTTTCAGTTTCCAAGCTGTTTTCACCTTTAAGC 10372
Query 162628 GCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGA 162687
|| || | | || || || | |||||||| | |||||||| ||||||||||
Sbjct 10371 GCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCGCAGAGG 10312
Query 162688 TTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCG 162747
|| || | |||||||| || || || ||| ||||| | | ||||| | |||
Sbjct 10311 TTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATATCT 10252
Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807
||||| || | |||| || || || || || ||||| ||| ||| | |||||||
Sbjct 10251 GCCTGCACCCTGTTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACA 10192
Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTC 162864
|| || ||||| || ||||| ||| | || || || | || | || || |||
Sbjct 10191 TTATCAAAACATGACACTATTCCCTTTACAGC-AGCAAAAAAAGATTCTGGAGACTTTT- 10134
Query 162865 CTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCG 162924
| || || || | |||||| | |||||||||||| ||||| | || || | ||| ||
Sbjct 10133 -TGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCA 10075
Query 162925 AACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCG 162984
| |||||| || || || | ||||| || || || || || || || || || || ||
Sbjct 10074 AGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCA 10015
Query 162985 CGACTGAGAG 162994
| |||||||
Sbjct 10014 CTGCTGAGAG 10005
>seq66667
Length=814
Score = 84.2 bits (92), Expect = 3e-11
Identities = 206/307 (67%), Gaps = 8/307 (3%)
Strand=Plus/Plus
Query 162630 CTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689
|||||| ||| || ||||| |||||||| | || || |||||||| ||| ||
Sbjct 511 CTTCAGGGCACGGACGATCTCGGCGTTGGTCTTGATAGGGAAATCGGTGCCACAGGTGTT 570
Query 162690 AATAACATATTTCCACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCG 162747
| ||||| ||| | || | | | || | | ||| ||||| | ||||| || |||
Sbjct 571 GAGGACATAGCGCCA--TGACACCGGGCTCTGCAACAGGTCCTGCATGCAGTTGAGGTCG 628
Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807
||||| | || ||| || || || || || | |||| | | || |||||||||
Sbjct 629 GCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCCAGGCGGCTCGCCACAAAGACA 688
Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCC 162865
||| ||| || | || || || ||||||| ||| || | || | || |
Sbjct 689 TTGGGGAAGCAGGCCACGATGGCCCGCACGGCCGCCTGGAAGGCAGCTGGG--GACTTGC 746
Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925
|||| | ||| |||||||| | ||||| ||||||||||||| || ||| | | ||| |
Sbjct 747 TATCAATGTGGACGCAGTAAATGTTCTGGGGGGCGTAGATGGACCGCAGGAGCCGCTCAA 806
Query 162926 ACATCTC 162932
|||||||
Sbjct 807 ACATCTC 813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577924989891200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |