Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq53660 194 2e-43 seq13459 194 2e-43 seq49468 188 1e-41 seq25834 163 4e-34 seq3344 156 6e-32 seq23052 143 4e-28 seq38384 138 2e-26 >seq53660 Length=1098 Score = 194 bits (214), Expect = 2e-43 Identities = 190/244 (78%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || | | ||||||||||| ||||||||| ||||| || || |||| Sbjct 662 TACTCGATCTATGTGTACAAGGTGCTGAAGCAGGTGAACCCCGACAC-----GGGCATC- 609 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||| ||||| |||||||||||||| ||||||||||| |||| ||||||| | Sbjct 608 TCATCCAAGGCCATGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCC 549 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||| ||| ||||||| || |||||||||| ||| ||| | |||| |||||| Sbjct 548 GGCGAGGCCTCTCGGCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATC 489 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || ||||| || | ||| |||||| ||||||| |||||| |||||||||||| Sbjct 488 CAGACGGCTGTGCGGCTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCTGTCTCCGAGGGC 429 Query 725139 ACCA 725142 |||| Sbjct 428 ACCA 425 >seq13459 Length=5818 Score = 194 bits (214), Expect = 2e-43 Identities = 190/244 (78%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || | | ||||||||||| ||||||||||||||| || || |||| Sbjct 1242 TACTCGATCTATGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC- 1189 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||| ||||| |||||||||||||| ||||||||||| |||| ||||||| | Sbjct 1188 TCGTCCAAGGCCATGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCC 1129 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||| ||| ||||||| || |||||||||| ||| ||| | |||| |||||| Sbjct 1128 GGCGAGGCCTCTCGGCTGGCGCACTACAACAAGCGCTCCACCATCCCCTCGCGGGAGATC 1069 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||| || | ||| |||||| ||||| | |||||| ||||| |||||| Sbjct 1068 CAGACGGCCGTGCGGCTCCTGCTGCCCGGCGAGCTGGCAAAGCACGCTGTCTCTGAGGGC 1009 Query 725139 ACCA 725142 |||| Sbjct 1008 ACCA 1005 >seq49468 Length=1811 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 1561 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1508 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 1507 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGG 1448 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1447 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1388 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||||| ||||||| |||||| ||||||||||| |||| Sbjct 1387 CTCCTGCTGCCCGGCGCGCTGGCCAAGCACGCTGTCTCCGAGGGAACCA 1339 >seq25834 Length=1395 Score = 163 bits (180), Expect = 4e-34 Identities = 184/244 (75%), Gaps = 18/244 (7%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || || ||||||||||| ||||||||||||||| | ||||| ||| Sbjct 932 TACTCGATCTACATGTACAAGGTGCTGAAGCAGGTGCACCCCGACA----TGGGC-ATC- 985 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||| ||||| |||||||||||||||||||||||||| |||| ||||||| | Sbjct 986 TCGTCCAAGGCCATGGGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCC 1045 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||| ||| ||||||| || |||||||||| ||| ||| | |||| |||||| Sbjct 1046 GGCGAGGCCTCTCGGCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATC 1105 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||| | || || ||| ||| |||||| ||||| ||||| Sbjct 1106 CAGACGGCCGTGCG---GCTCCTG---------CTGCCCAAGCACGCTGTCTCTGAGGGT 1153 Query 725139 ACCA 725142 |||| Sbjct 1154 ACCA 1157 >seq3344 Length=2059 Score = 156 bits (172), Expect = 6e-32 Identities = 181/245 (74%), Gaps = 22/245 (9%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||| ||||||| || | |||| || |||| ||||| Sbjct 354 TACAAGGTGCTGAAGCAGGTGC-CCCCCGACACG----GGCATC-TCGTCCAAGGCCATG 407 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 408 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGG 467 Query 725034 CTG----------------GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 ||| |||| || |||||||||| ||| ||| | |||| ||||| Sbjct 468 CTGGGGCGCCACAACAACAGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGAT 527 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||| |||||||| || | ||| |||||| ||||| | |||||| ||||| ||||| Sbjct 528 CCAGACGGCCGTGCGGCTCCTGCTGCCCGGCGAGCTGGCAAAGCACGCTGTCTCTGAGGG 587 Query 725138 CACCA 725142 ||||| Sbjct 588 CACCA 592 >seq23052 Length=26828 Score = 143 bits (158), Expect = 4e-28 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 13893 TCTACAAGGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCCTCCAAGGCCA 13840 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| |||||||| ||||| | || || || | || ||| | Sbjct 13839 TGGGCATCATGAACTCCTTTGTCAATGACATCTTTGAGCGTATTGCTGGAGAAGCCTCCC 13780 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||| ||||| ||||||| Sbjct 13779 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACAGCCGTGC 13720 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || || ||||||| |||||||||||| |||||||||| Sbjct 13719 GCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGCACCA 13669 >seq38384 Length=3273 Score = 138 bits (152), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| | ||| ||| |||| ||| Sbjct 2914 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCTCCAAGGCCA 2861 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| || || | Sbjct 2860 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGTGAAGCATCCC 2801 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||| ||| ||| ||| | || | ||||||||||| || ||| Sbjct 2800 GCCTGGCTCACTACAACAAACGCTCCACCATCACCTCGAGGGAGATCCAGACAGCTGTGA 2741 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || ||||||| |||||| ||||| || || |||| Sbjct 2740 GGCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCTGTCTCGGAAGGGACCA 2690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171047804215764