Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq22336 132 7e-26
seq32638 125 1e-23
seq25550 93.3 6e-14
seq23382 89.7 7e-13
>seq22336
Length=52721
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| |
Sbjct 42200 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 42259
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||||||||| |||| ||||| |
Sbjct 42260 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGG 42319
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 42320 CAACCACTCTCTCACC 42335
>seq32638
Length=16397
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | |||||||||||| ||||| |||||||||| || | || |
Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| | ||||| || |||||||||||||| ||||| ||||| ||||| |
Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585
Query 39759 CAAC 39762
| ||
Sbjct 13586 CTAC 13589
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370
||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||||
Sbjct 12166 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 12225
Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418
|||| || || ||||||||||| ||||| ||||| ||| || |||
Sbjct 12226 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 12273
>seq25550
Length=27429
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| ||| | || || || || || || |
Sbjct 25243 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 25302
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || || || |||||||||||||||||||| ||||| ||||| || | | | | |
Sbjct 25303 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 25362
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | || ||||| | ||||| ||| ||| || | ||||| ||||
Sbjct 25363 TCTGGGAGATCTCCCACACTGTCTTGTAAAGCTGCTTCAAGTCATCAGGAA 25413
>seq23382
Length=2546
Score = 89.7 bits (98), Expect = 7e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||||||||||| || | || |||||||| || || || ||
Sbjct 537 GAACCCTCATATGTTTCATAAGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAA 478
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
||||| |||||||| || || ||||| | || || | || || || | || ||
Sbjct 477 GCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTCTCA 418
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125
|| || || | || || || |||||||||| ||||| |||||||| || || ||
Sbjct 417 AAGGGGTATCTCATCAGGATGAAAGCATCTGCCAGGCCCTGCACCCCAATGCCAATGGG 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686306707264080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |