Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 116 3e-21
seq32638 114 1e-20
seq15741 98.7 8e-16
>seq19977
Length=118669
Score = 116 bits (128), Expect = 3e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 41078 TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACAT 41137
|||||| || ||| ||||||||| | || || || | ||||| || || || || ||
Sbjct 57404 TCAGTTCTATGTTCTAAATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATAT 57463
Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197
|||||| || || || || || || || || ||| | |||||||| ||||||||||| ||
Sbjct 57464 GGGACTTGGAGTGCCTTTCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCA 57523
Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACAT 41257
|| || |||| ||||| || || | ||||| || ||||||| || || ||| |
Sbjct 57524 TGTCACAGGGCTAAAGCCTGGAGAGTTCATACACACATTTGGAGATGCTCACATATACCT 57583
Query 41258 TAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCC 41311
||||| |||| || ||| || ||||| || | || ||||| |||||
Sbjct 57584 GAATCATCTAGAACCTCTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCC 57637
>seq32638
Length=16397
Score = 114 bits (126), Expect = 1e-20
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | ||||||| |||||||| ||||| || || |||||||| |||||
Sbjct 15716 CAAGAAGTACAAATCACAGAAGCTCGATGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 15657
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||||||||| || || || ||||| ||||||
Sbjct 15656 ATACATTCTGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 15609
>seq15741
Length=12914
Score = 98.7 bits (108), Expect = 8e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| ||||| || || ||| | || ||||| || ||| ||||||||| | |
Sbjct 7659 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTAT 7600
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || | ||||| || || || || |||||||| || || || || || || || |
Sbjct 7599 CTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAATATTGCCA 7540
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| ||| | |||||||| ||||||||||| ||||| ||
Sbjct 7539 GCTATTCACTGCTCACCTATATGATTGCCCACGTCAC 7503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397116329382610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |