Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19977 116 3e-21 seq32638 114 1e-20 seq15741 98.7 8e-16 >seq19977 Length=118669 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41078 TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACAT 41137 |||||| || ||| ||||||||| | || || || | ||||| || || || || || Sbjct 57404 TCAGTTCTATGTTCTAAATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATAT 57463 Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 |||||| || || || || || || || || ||| | |||||||| ||||||||||| || Sbjct 57464 GGGACTTGGAGTGCCTTTCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCA 57523 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACAT 41257 || || |||| ||||| || || | ||||| || ||||||| || || ||| | Sbjct 57524 TGTCACAGGGCTAAAGCCTGGAGAGTTCATACACACATTTGGAGATGCTCACATATACCT 57583 Query 41258 TAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCC 41311 ||||| |||| || ||| || ||||| || | || ||||| ||||| Sbjct 57584 GAATCATCTAGAACCTCTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCC 57637 >seq32638 Length=16397 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| |||||||| ||||| || || |||||||| ||||| Sbjct 15716 CAAGAAGTACAAATCACAGAAGCTCGATGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 15657 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 15656 ATACATTCTGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 15609 >seq15741 Length=12914 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| | | Sbjct 7659 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTAT 7600 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | ||||| || || || || |||||||| || || || || || || || | Sbjct 7599 CTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAATATTGCCA 7540 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| ||||||||||| ||||| || Sbjct 7539 GCTATTCACTGCTCACCTATATGATTGCCCACGTCAC 7503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397116329382610