Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq16688 199 1e-45
seq26232 179 1e-39
seq31179 138 3e-27
seq37685 132 1e-25
seq20546 95.1 4e-14
seq70105 93.3 1e-13
seq46386 93.3 1e-13
>seq16688
Length=7170
Score = 199 bits (220), Expect = 1e-45
Identities = 378/549 (69%), Gaps = 8/549 (1%)
Strand=Plus/Plus
Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819
|||| |||| ||||||| ||||| | || ||||| || |||||||| ||| | || ||
Sbjct 1381 GAAAGAAATGTTCTTATCTTTGACCTCGGAGGTGGCACCTTTGATGTGTCAATTCTGACT 1440
Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879
||||||| || || ||||| || ||| | ||||| ||||| || || | |||||||||
Sbjct 1441 ATTGAAGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAA 1500
Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938
|| |||||||| || | || || || || || || || || ||||| || |
Sbjct 1501 GACTTTGATAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAACG-CAAGCACAAGAA 1559
Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998
|| || | || || |||||| | |||||||| | || || || || ||||| ||
Sbjct 1560 AGACATCAGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGTACCGCCTGCGAGCGTGCGAA 1619
Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058
|||| | | || || | || || || |||||||||||||||||| ||| || |
Sbjct 1620 GCGTACTCTGTCGTCCAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTAT 1679
Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116
|| |||| |||| || || | ||||| |||||||| || | | || || ||
Sbjct 1680 TGACTTCTACACATCCATCACCAGAGCTCGCTTTGAAGA--GCTGAACGCTGACCTGTTC 1737
Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176
| | || |||||||||||||||| | | |||||| || || |||| |||
Sbjct 1738 CGTGGTACCCTGGATCCTGTGGAAAAGGCCCTGCGAGATGCCAAGCTGGACAAATCGCAG 1797
Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236
|| |||| | || | |||||||| ||||| ||||| ||||| | || | | ||
Sbjct 1798 ATCCATGACATCGTCCTGGTTGGTGGGTCTACTCGTATCCCAAAGATCCAGAAACTGCTG 1857
Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295
|| || || ||||||||||| | | ||| | || ||||| ||||||||||| ||
Sbjct 1858 CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGC 1916
Query 350296 ATATGGTGC 350304
||||||||
Sbjct 1917 TTATGGTGC 1925
Score = 127 bits (140), Expect = 6e-24
Identities = 352/532 (66%), Gaps = 6/532 (1%)
Strand=Plus/Minus
Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320
|||||||||| || ||||||||||| || || || | | | | | |||||||||||
Sbjct 1927 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCATTG 1869
Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379
|| |||| ||| | ||| || || || ||||| || | ||| || ||||| || | ||
Sbjct 1868 AAGAAATCCTGCA-GCAGTTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGGAC 1810
Query 183380 TACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438
| |||| ||| | ||| | | ||| | |||| | | ||||| ||||| |
Sbjct 1809 GATGTCATGGATCTGCGATTTGTCCAGCTTG-GCATCTCGCAGGGCCTTTTCCACAGGAT 1751
Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498
||| || | || | || | |||||| || | ||||| || | ||||
Sbjct 1750 CCAGGGTACCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATG 1691
Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558
| ||||||||||| | ||| | |||||||||||||| | || || || |
Sbjct 1690 TGTAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTGGACG 1631
Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618
| | || | || || || || || || || | || ||||| | || ||| || |
Sbjct 1630 ACAGAGTACGCTTCGCACGCTCGCAGGCGGTACGGAGGCGACGAACTGCTCTCTTGTTCT 1571
Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTG 183678
| | || |||| || || || | ||| || |||| ||| || || | | | |
Sbjct 1570 CACTGATGTCTTTCTTGTGCTTGCGTTTGAACTCAGCAATGAAGTGGTTGACCATGCGGT 1511
Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738
||||||| ||||| ||||| || || || || || ||||| | ||| || ||||| || |
Sbjct 1510 TATCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGC 1451
Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
| ||||||||| | | |||||| |||||||| || ||||| || | |||||
Sbjct 1450 CATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCGAGGTCAAA 1399
Score = 111 bits (122), Expect = 5e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657
|| || ||| | ||||| | ||||||||||||||||| ||||| | |||||| ||
Sbjct 1131 ACCGTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCT 1190
Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717
|||||||||||||| | |||||| || | ||||| || |||| || ||||| || ||
Sbjct 1191 ACAAAAGATGCTGGAACCATTGCAGGTCTCAATGTACTGCGAATTATCAATGAGCCGACA 1250
Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748
||||| || || || ||||| || || ||||
Sbjct 1251 GCTGCTGCCATAGCCTATGGTCTGGACAAAA 1281
Score = 89.7 bits (98), Expect = 2e-12
Identities = 116/157 (74%), Gaps = 5/157 (3%)
Strand=Plus/Plus
Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492
|| |||||| | || || | ||||| ||||| || || || | || | |||||
Sbjct 873 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AACGATGCTGGCAGACCAAAA 929
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551
| |||| || || ||||| || | ||| | ||| ||||| ||||||||||| || ||
Sbjct 930 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCTAT 988
Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588
||||||| ||||||||||||||||| |||||||||
Sbjct 989 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 1025
>seq26232
Length=2247
Score = 179 bits (198), Expect = 1e-39
Identities = 572/879 (65%), Gaps = 20/879 (2%)
Strand=Plus/Minus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|| |||||||| |||||||| || ||| | || | || |||||||||| ||
Sbjct 1889 AAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTTATCACA 1830
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || || || || ||||| |||| || || || ||||| ||||||| ||| |
Sbjct 1829 GTGCCCGCTTACTTCAATGACTCCCAACGCCAGGCCACCAAAGACGCTGGCACCATCACT 1770
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | || || | | || || ||||| ||||| || || || || || ||||| |
Sbjct 1769 GGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGGCTTG 1710
Query 349742 GATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| || | || || ||| || || | || || ||||| || || || ||
Sbjct 1709 GACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGGGC 1650
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
||||||||||| || | || || | || || || || ||||| || || | || |||
Sbjct 1649 ACTTTTGATGTGTCCATCCTTACCATCGAGGATGGCATCTTTGAGGTGAAGTCCACAGCT 1590
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || ||||| ||||| || || ||||| || || | || |||||||| ||
Sbjct 1589 GGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGGAA 1530
Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCT 349974
||||| |||||| |||| || ||| |||| | || |||| || | || ||
Sbjct 1529 GAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGCGGCT 1471
Query 349975 AAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAACCTCTATT 350032
| || || ||||| | || ||||| | | ||| || || || ||| | |||
Sbjct 1470 GCGTACGGCTTGTGAGAGGGCGAAGCG--CACTCTCAGCTCCTCCACGCAAGCTAGCATT 1413
Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092
|| || || || || || |||| || |||| | || ||||| |||||||| ||
Sbjct 1412 GAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCTCGCTTC 1353
Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152
|| || | | ||||| || | | || |||| || ||||| || | |
Sbjct 1352 GAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCCCTGCGT 1293
Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212
||||| || | ||| ||||| | || | || | || ||||| || || |||
Sbjct 1292 GATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCCACTCGT 1233
Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATC 350271
|| || || | ||| || | ||| || || || ||||||||||| | | | ||| |
Sbjct 1232 ATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGAGC 1173
Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331
|| || || ||||| ||||||||||| |||||||| || |||||| |||| | ||
Sbjct 1172 -ATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTGCAGGCAGCTATCCTCATGGG 1114
Query 350332 AAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388
| | ||| ||| | | || | ||||| | || | ||||| || || || || ||
Sbjct 1113 AGACAAG---TCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCCT 1057
Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427
|| | || || |||||| ||| ||||| | ||| ||
Sbjct 1056 GGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCAT 1018
>seq31179
Length=12480
Score = 138 bits (152), Expect = 3e-27
Identities = 142/183 (78%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556
||| || || ||||| || | ||| | ||| |||| ||||||||||| || |||||||
Sbjct 10047 GGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCCACCCAGAAGAAATTTCTTCCATGGTTT 9989
Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616
|| ||||||||||||||||| ||||||||| | || | || | ||| | |||||
Sbjct 9988 TAACCAAAATGAAGGAAATTGCAGAAGCATATCTCGGGAAGACCATTACTAACGCTGTAG 9929
Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676
| ||||||||||||||||| ||||| | |||||| || |||||||||||||| | ||
Sbjct 9928 TGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATGCTGGAACCA 9869
Query 349677 TTG 349679
|||
Sbjct 9868 TTG 9866
>seq37685
Length=54521
Score = 132 bits (146), Expect = 1e-25
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| |||||||| || || || || || | || || ||||| || || || | ||||||
Sbjct 54194 AGGACAAGATGGAGGGTGGATTCCTTCTAGATGTTGTAATCGGACAAGGTACAACCATCT 54253
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||||||||| || | |||||||| || ||||| ||||| || |||
Sbjct 54254 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 54313
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || ||||| ||||| | ||| || ||||| ||||| || | |||
Sbjct 54314 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 54373
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736
|| || || || || || ||||| |||||||
Sbjct 54374 TTGCCAGTCAGGGTCTTCACAAAGATCTGCA 54404
>seq20546
Length=6288
Score = 95.1 bits (104), Expect = 4e-14
Identities = 126/173 (73%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774
|| ||||| || || || || ||||| || || | ||| | | |||| || || |||
Sbjct 5197 ACGGCTGCTGCCATCGCTTACGGGCTGGACAAGA-GAGAGGGCGAGAAGAACATC--CTT 5141
Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834
| ||||| || |||||||| || |||||||| || || || || |||| | ||| |
Sbjct 5140 GTGTTTGACTTGGGTGGTGGAACGTTTGATGTCTCCCTCCTCACCATTGACAATGGAGTC 5081
Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
||||||||| || ||| |||||| || || || ||||||||||| |||||
Sbjct 5080 TTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 5028
>seq70105
Length=6220
Score = 93.3 bits (102), Expect = 1e-13
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720
||| |||||||| | ||| |||| ||||| | ||| | ||| || |||||||| |
Sbjct 1415 CATTCCATAGAAGAGTTTCACCTTTTTGCCATTCTTTTCCATAACCTCTCCAGCACACTG 1474
Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCC 130771
|||||| | || ||||||||||||||||| ||||||||||| || |||||
Sbjct 1475 ATCATGGCCTGCAAACATTCCTCCAAGCATGACAAAATCAGCACCGGCTCC 1525
>seq46386
Length=15654
Score = 93.3 bits (102), Expect = 1e-13
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607
||||||||||||| || ||||| | ||| || |||||||| || || || |||||||| |
Sbjct 15140 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 15199
Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636
| || || ||||||||||||||||| |||
Sbjct 15200 TCAGTCGCTGCTGATCAGGAGGAATGCCT 15228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1513893037677966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |