Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq16688 199 1e-45 seq26232 179 1e-39 seq31179 138 3e-27 seq37685 132 1e-25 seq20546 95.1 4e-14 seq70105 93.3 1e-13 seq46386 93.3 1e-13 >seq16688 Length=7170 Score = 199 bits (220), Expect = 1e-45 Identities = 378/549 (69%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| |||| ||||||| ||||| | || ||||| || |||||||| ||| | || || Sbjct 1381 GAAAGAAATGTTCTTATCTTTGACCTCGGAGGTGGCACCTTTGATGTGTCAATTCTGACT 1440 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || ||||| || ||| | ||||| ||||| || || | ||||||||| Sbjct 1441 ATTGAAGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAA 1500 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || |||||||| || | || || || || || || || || ||||| || | Sbjct 1501 GACTTTGATAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAACG-CAAGCACAAGAA 1559 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || |||||| | |||||||| | || || || || ||||| || Sbjct 1560 AGACATCAGTGAGAACAAGAGAGCAGTTCGTCGCCTCCGTACCGCCTGCGAGCGTGCGAA 1619 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | || || | || || || |||||||||||||||||| ||| || | Sbjct 1620 GCGTACTCTGTCGTCCAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTAT 1679 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| |||| || || | ||||| |||||||| || | | || || || Sbjct 1680 TGACTTCTACACATCCATCACCAGAGCTCGCTTTGAAGA--GCTGAACGCTGACCTGTTC 1737 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || |||||||||||||||| | | |||||| || || |||| ||| Sbjct 1738 CGTGGTACCCTGGATCCTGTGGAAAAGGCCCTGCGAGATGCCAAGCTGGACAAATCGCAG 1797 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| | || | |||||||| ||||| ||||| ||||| | || | | || Sbjct 1798 ATCCATGACATCGTCCTGGTTGGTGGGTCTACTCGTATCCCAAAGATCCAGAAACTGCTG 1857 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || ||||||||||| | | ||| | || ||||| ||||||||||| || Sbjct 1858 CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGC 1916 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 1917 TTATGGTGC 1925 Score = 127 bits (140), Expect = 6e-24 Identities = 352/532 (66%), Gaps = 6/532 (1%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | ||||||||||| Sbjct 1927 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCATTG 1869 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| | ||| || || || ||||| || | ||| || ||||| || | || Sbjct 1868 AAGAAATCCTGCA-GCAGTTTCTGGATCTTTGGGATACGAGTAGACCCACCAACCAGGAC 1810 Query 183380 TACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | ||| | | ||| | |||| | | ||||| ||||| | Sbjct 1809 GATGTCATGGATCTGCGATTTGTCCAGCTTG-GCATCTCGCAGGGCCTTTTCCACAGGAT 1751 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| || | || | || | |||||| || | ||||| || | |||| Sbjct 1750 CCAGGGTACCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATG 1691 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 | ||||||||||| | ||| | |||||||||||||| | || || || | Sbjct 1690 TGTAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTGGACG 1631 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | || || || || || || || | || ||||| | || ||| || | Sbjct 1630 ACAGAGTACGCTTCGCACGCTCGCAGGCGGTACGGAGGCGACGAACTGCTCTCTTGTTCT 1571 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTG 183678 | | || |||| || || || | ||| || |||| ||| || || | | | | Sbjct 1570 CACTGATGTCTTTCTTGTGCTTGCGTTTGAACTCAGCAATGAAGTGGTTGACCATGCGGT 1511 Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 ||||||| ||||| ||||| || || || || || ||||| | ||| || ||||| || | Sbjct 1510 TATCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGC 1451 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | ||||||||| | | |||||| |||||||| || ||||| || | ||||| Sbjct 1450 CATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCGAGGTCAAA 1399 Score = 111 bits (122), Expect = 5e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| | ||||| | ||||||||||||||||| ||||| | |||||| || Sbjct 1131 ACCGTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCT 1190 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| || | ||||| || |||| || ||||| || || Sbjct 1191 ACAAAAGATGCTGGAACCATTGCAGGTCTCAATGTACTGCGAATTATCAATGAGCCGACA 1250 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 1251 GCTGCTGCCATAGCCTATGGTCTGGACAAAA 1281 Score = 89.7 bits (98), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 873 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AACGATGCTGGCAGACCAAAA 929 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | ||| ||||| ||||||||||| || || Sbjct 930 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCTAT 988 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 989 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 1025 >seq26232 Length=2247 Score = 179 bits (198), Expect = 1e-39 Identities = 572/879 (65%), Gaps = 20/879 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| |||||||| || ||| | || | || |||||||||| || Sbjct 1889 AAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTTATCACA 1830 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| |||| || || || ||||| ||||||| ||| | Sbjct 1829 GTGCCCGCTTACTTCAATGACTCCCAACGCCAGGCCACCAAAGACGCTGGCACCATCACT 1770 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || | | || || ||||| ||||| || || || || || ||||| | Sbjct 1769 GGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGGCTTG 1710 Query 349742 GATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || | || || ||| || || | || || ||||| || || || || Sbjct 1709 GACAAGAAAGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGGGC 1650 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||||||||| || | || || | || || || || ||||| || || | || ||| Sbjct 1649 ACTTTTGATGTGTCCATCCTTACCATCGAGGATGGCATCTTTGAGGTGAAGTCCACAGCT 1590 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || ||||| ||||| || || ||||| || || | || |||||||| || Sbjct 1589 GGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGGAA 1530 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCT 349974 ||||| |||||| |||| || ||| |||| | || |||| || | || || Sbjct 1529 GAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGCGGCT 1471 Query 349975 AAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAACCTCTATT 350032 | || || ||||| | || ||||| | | ||| || || || ||| | ||| Sbjct 1470 GCGTACGGCTTGTGAGAGGGCGAAGCG--CACTCTCAGCTCCTCCACGCAAGCTAGCATT 1413 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || || |||| || |||| | || ||||| |||||||| || Sbjct 1412 GAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCTCGCTTC 1353 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | | ||||| || | | || |||| || ||||| || | | Sbjct 1352 GAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCCCTGCGT 1293 Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 ||||| || | ||| ||||| | || | || | || ||||| || || ||| Sbjct 1292 GATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCCACTCGT 1233 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATC 350271 || || || | ||| || | ||| || || || ||||||||||| | | | ||| | Sbjct 1232 ATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGAGC 1173 Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || || || ||||| ||||||||||| |||||||| || |||||| |||| | || Sbjct 1172 -ATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTGCAGGCAGCTATCCTCATGGG 1114 Query 350332 AAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388 | | ||| ||| | | || | ||||| | || | ||||| || || || || || Sbjct 1113 AGACAAG---TCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCCT 1057 Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 || | || || |||||| ||| ||||| | ||| || Sbjct 1056 GGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCAT 1018 >seq31179 Length=12480 Score = 138 bits (152), Expect = 3e-27 Identities = 142/183 (78%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556 ||| || || ||||| || | ||| | ||| |||| ||||||||||| || ||||||| Sbjct 10047 GGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCCACCCAGAAGAAATTTCTTCCATGGTTT 9989 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 || ||||||||||||||||| ||||||||| | || | || | ||| | ||||| Sbjct 9988 TAACCAAAATGAAGGAAATTGCAGAAGCATATCTCGGGAAGACCATTACTAACGCTGTAG 9929 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | ||||||||||||||||| ||||| | |||||| || |||||||||||||| | || Sbjct 9928 TGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATGCTGGAACCA 9869 Query 349677 TTG 349679 ||| Sbjct 9868 TTG 9866 >seq37685 Length=54521 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || || || | || || ||||| || || || | |||||| Sbjct 54194 AGGACAAGATGGAGGGTGGATTCCTTCTAGATGTTGTAATCGGACAAGGTACAACCATCT 54253 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 54254 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 54313 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 54314 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 54373 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || || || || ||||| ||||||| Sbjct 54374 TTGCCAGTCAGGGTCTTCACAAAGATCTGCA 54404 >seq20546 Length=6288 Score = 95.1 bits (104), Expect = 4e-14 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || || || || ||||| || || | ||| | | |||| || || ||| Sbjct 5197 ACGGCTGCTGCCATCGCTTACGGGCTGGACAAGA-GAGAGGGCGAGAAGAACATC--CTT 5141 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| || |||||||| || || || || |||| | ||| | Sbjct 5140 GTGTTTGACTTGGGTGGTGGAACGTTTGATGTCTCCCTCCTCACCATTGACAATGGAGTC 5081 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| |||||| || || || ||||||||||| ||||| Sbjct 5080 TTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 5028 >seq70105 Length=6220 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720 ||| |||||||| | ||| |||| ||||| | ||| | ||| || |||||||| | Sbjct 1415 CATTCCATAGAAGAGTTTCACCTTTTTGCCATTCTTTTCCATAACCTCTCCAGCACACTG 1474 Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCC 130771 |||||| | || ||||||||||||||||| ||||||||||| || ||||| Sbjct 1475 ATCATGGCCTGCAAACATTCCTCCAAGCATGACAAAATCAGCACCGGCTCC 1525 >seq46386 Length=15654 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||||||||| || ||||| | ||| || |||||||| || || || |||||||| | Sbjct 15140 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 15199 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 15200 TCAGTCGCTGCTGATCAGGAGGAATGCCT 15228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513893037677966