Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq15741 102 6e-17 seq19977 95.1 9e-15 >seq15741 Length=12914 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| ||| |||||||| || ||||| || || || ||||| || || ||||| Sbjct 7500 CCTGTGACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACT 7559 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||||||||| || || ||||| ||||| || |||| || | | | ||| Sbjct 7560 CCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAGAACA 7619 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || ||||| |||| || |||||||| |||||| Sbjct 7620 TAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATC 7658 >seq19977 Length=118669 Score = 95.1 bits (104), Expect = 9e-15 Identities = 209/311 (67%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 111574 TCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCATCAGCAACAAA 111632 ||||| || || | |||||||| || ||| || |||| | |||||| || || ||| Sbjct 57736 TCCATTTTAATGGGTGGATGAGGATTAGAAT-CTTCAATCTGAAAGTCTTCTGCCTTAAA 57678 Query 111633 ATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCG 111692 || ||| |||| | | |||| | ||||| ||||| || | |||| || Sbjct 57677 GTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGAAAAGGTCTTGGCTCTCT 57618 Query 111693 GGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACA 111752 ||| || | || || ||| | || ||||| | || | || |||||||| | Sbjct 57617 CTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATGTGAGCATCTCCAAATGT 57558 Query 111753 ATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACT 111812 || || || || | ||||| | || |||| || |||||||| || ||||| || Sbjct 57557 GTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATCATATAGGTGAGCAGTGA 57498 Query 111813 GTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTG 111872 || || ||||| || || ||||| || || ||||||||||| || || ||||| ||||| Sbjct 57497 ATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTG 57438 Query 111873 ACATGATAGTT 111883 || |||| || Sbjct 57437 GCAAGATAATT 57427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391610638635886