Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq66667 143 4e-29 >seq66667 Length=814 Score = 143 bits (158), Expect = 4e-29 Identities = 531/820 (65%), Gaps = 18/820 (2%) Strand=Plus/Minus Query 13733 CGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCA 13792 ||||||||| ||||| |||||| || ||||||||||||| |||||| | ||||||||||| Sbjct 814 CGAGATGTTTGAGCGGCTCCTGCGGTCCATCTACGCCCCCCAGAACATTTACTGCGTCCA 755 Query 13793 CGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTT 13852 | | || ||||||| | | ||| || ||| |||||||| ||||| Sbjct 754 CATTGATAGCAAGTCCCCAGCTGCCTTCCAGGCGGCCGTGCGGGCCATCGTGGCCTGCTT 695 Query 13853 CCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGT 13912 ||| || || |||| ||| ||| | | ||||| || | ||||||| || | Sbjct 694 CCCCAATGTCTTTGTGGCGAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCT 635 Query 13913 GCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGTGGAGGTAC 13970 |||||||||||||| ||||||| ||||||| | | || |||| ||| | || Sbjct 634 GCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCGGTGTCA--TGGCGCTAT 577 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| || || | || ||||| ||||||||||| |||||||| || || Sbjct 576 GTCCTCAACACCTGTGGCACCGATTTCCCTATCAAGACCAACGCCGAGATCGTCCGTGCC 517 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAACCACAAGC 14088 |||||| ||| || ||||| | ||||| || || | | | | || ||||| Sbjct 516 CTGAAGATGCTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCT--CGGCCCTCAAGC 459 Query 14089 TGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 | | ||| ||| | | |||| |||| | | | | || ||| | | Sbjct 458 GGGAGCGCTGGCAGTACCA-CCACGAAGTGGGGAAGTTCATC-TCCCGG---ACAGCCAC 404 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 || | || ||||| || | || ||||| || | || ||||| ||| | | | Sbjct 403 AG--AGAAACTGCCGCCACCCCACAACGCTCCCATGTTCACAGGCAACGCGTACATCGTG 346 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCAC 14267 ||||| |||| |||||| | |||| | || || | ||| | | || | | Sbjct 345 GTCACACGGGCCTTCGTGCAGCACGTCTTTGAGAACCCCACCGTGCAGCAGTTCCTCGAG 286 Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| | ||||||| |||||||| || ||||| | |||||||| | | | ||| Sbjct 285 TGGGCCAAGGACACCTACAGCCCTGAGGAGCATGTCTGGGCCACTCTCAACCGCATGCCT 226 Query 14328 GGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAG 14387 || || || | || ||| | | ||||||| | ||||||||| ||| | Sbjct 225 GGTGTTCCAGGCGCCATGCCCCAGAATGACAAGTACCAGCTGTCGGACATGAATGCCCTG 166 Query 14388 GTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCG 14447 | | | ||||||||||| ||| ||||| || | || || || || | ||||| Sbjct 165 CCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGTGACACCAGCAAGGGCGCACCCTACCCA 106 Query 14448 CCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG 14507 || ||| |||| ||| | |||| ||||||||| |||| | |||||| || ||| Sbjct 105 CCCTGCACCGGCCGGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACCTGCCCTGG 46 Query 14508 CTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| | | ||||| || ||||||||||||||| Sbjct 45 ATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161798622720