Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq19977 145 6e-30 seq15741 120 2e-22 seq1195 96.9 3e-15 >seq19977 Length=118669 Score = 145 bits (160), Expect = 6e-30 Identities = 190/263 (72%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 29783 AAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29842 || || |||||||||||||| | | || ||| | | || || ||| ||||| Sbjct 57694 AAGTCTTCTGCCTTAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGA 57635 Query 29843 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACG 29902 || ||||| ||||| |||| || ||| || || ||||| | | || |||||| | | Sbjct 57634 AAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATG 57575 Query 29903 TGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29962 ||||| ||||| | |||| | |||||||| || | |||||| ||||| || || ||| Sbjct 57574 TGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATC 57515 Query 29963 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 30022 || || ||||| || || |||||||| || || || || || || || ||||| || || Sbjct 57514 ATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCA 57455 Query 30023 GACCTCTGGTAGAGCTGACACGA 30045 |||||||| |||||||| || || Sbjct 57454 GACCTCTGATAGAGCTGGCAAGA 57432 >seq15741 Length=12914 Score = 120 bits (132), Expect = 2e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || ||||| ||||||||||||||||| || || || ||||||| || Sbjct 10734 CATATCTTTGTATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 10793 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 10794 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 10852 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || ||||| ||||||||||||||| ||||| || || || || || | Sbjct 10853 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 10910 Query 30402 ACAG 30405 |||| Sbjct 10911 ACAG 10914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30452 ||| |||||||||||||||||||| || | ||||| ||||||||||||||||| || | Sbjct 12160 TGATGAACCACAGCAGCTCCTCCAGCACTCCTTTCCAGAAGACCCTCTTGGTCGTTAGCA 12219 Query 30453 GGGGAAACTG 30462 | |||||||| Sbjct 12220 GTGGAAACTG 12229 >seq1195 Length=14407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 3095 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 3036 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || |||||||||||||||| | ||||| || ||| Sbjct 3035 ATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 2988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405963162307224