Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19977 107 2e-18 seq15741 105 6e-18 >seq19977 Length=118669 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 34622 AATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCG 34681 ||||| || | || |||||||||||||| | || ||||| ||||| | || ||||| Sbjct 57420 AATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCT 57479 Query 34682 TTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTT 34741 ||||| ||||| || || | |||||||| || ||||| || |||||| ||| | Sbjct 57480 TTCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCATGTCACAGGGCTAAAG 57539 Query 34742 CCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGG 34801 ||||| ||| | | || || || || ||||| || || |||||||| || | || | Sbjct 57540 CCTGGAGAGTTCATACACACATTTGGAGATGCTCACATATACCTGAATCATCTAGAACCT 57599 Query 34802 CTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATT 34855 || | || || || ||||||| |||| || ||| | |||| |||| || Sbjct 57600 CTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCCCAAACTCAGAATTCTT 57653 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 6490 AATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTC 6549 || |||| |||| | ||| || |||| ||||||| || || || | || | || Sbjct 57653 AAGAATTCTGAGTTTGGGAAAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTC 57594 Query 6550 GATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAA 6609 | || |||||||| || || ||||| || || || || | | ||| ||||| | Sbjct 57593 TAGATGATTCAGGTATATGTGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAG 57534 Query 6610 CCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCAC 6669 ||| |||||| || ||||| || |||||||| | || || ||||| ||||| ||||| Sbjct 57533 CCCTGTGACATGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCAC 57474 Query 6670 CCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 || | ||||| ||||| || | |||||||||||||| || | || ||||| Sbjct 57473 TCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATT 57420 >seq15741 Length=12914 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || || ||||| || |||||||| | || || ||||| ||||| ||||| || | Sbjct 7505 GACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAG 7564 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | |||||||||||||| || | || ||||| || ||||| Sbjct 7565 TCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAGAACATAGAA 7624 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| |||| ||||| || || | |||||||||| Sbjct 7625 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 7662 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| |||| ||||| ||||| || ||||| || Sbjct 7662 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAAT 7603 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 | || |||||||||||||| | || ||||| ||||| | || ||||| ||||| |||| Sbjct 7602 TATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAATATTG 7543 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||||||| || ||||| || || ||| Sbjct 7542 CCAGCTATTCACTGCTCACCTATATGATTGCCCACGTC 7505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || ||||| ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 10744 TATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 10803 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 10804 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 10863 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | |||||||| |||| Sbjct 10864 ACACCCTTTGCAGAGAGCTCTTTGG 10888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||| |||||||| ||||| ||| | || || || || || | Sbjct 10888 CCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 10829 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 10828 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 10769 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| ||||| || Sbjct 10768 AGTGGAGGCATTTTGGAGCGGAATA 10744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447869486799840