Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 107 2e-18
seq15741 105 6e-18
>seq19977
Length=118669
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 34622 AATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCG 34681
||||| || | || |||||||||||||| | || ||||| ||||| | || |||||
Sbjct 57420 AATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCT 57479
Query 34682 TTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTT 34741
||||| ||||| || || | |||||||| || ||||| || |||||| ||| |
Sbjct 57480 TTCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCATGTCACAGGGCTAAAG 57539
Query 34742 CCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGG 34801
||||| ||| | | || || || || ||||| || || |||||||| || | || |
Sbjct 57540 CCTGGAGAGTTCATACACACATTTGGAGATGCTCACATATACCTGAATCATCTAGAACCT 57599
Query 34802 CTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATT 34855
|| | || || || ||||||| |||| || ||| | |||| |||| ||
Sbjct 57600 CTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCCCAAACTCAGAATTCTT 57653
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 6490 AATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTC 6549
|| |||| |||| | ||| || |||| ||||||| || || || | || | ||
Sbjct 57653 AAGAATTCTGAGTTTGGGAAAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTC 57594
Query 6550 GATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAA 6609
| || |||||||| || || ||||| || || || || | | ||| ||||| |
Sbjct 57593 TAGATGATTCAGGTATATGTGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAG 57534
Query 6610 CCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCAC 6669
||| |||||| || ||||| || |||||||| | || || ||||| ||||| |||||
Sbjct 57533 CCCTGTGACATGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCAC 57474
Query 6670 CCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723
|| | ||||| ||||| || | |||||||||||||| || | || |||||
Sbjct 57473 TCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATT 57420
>seq15741
Length=12914
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
||| || || ||||| || |||||||| | || || ||||| ||||| ||||| || |
Sbjct 7505 GACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAG 7564
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||| ||||| || | |||||||||||||| || | || ||||| || |||||
Sbjct 7565 TCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAGAACATAGAA 7624
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773
||||| |||| ||||| || || | ||||||||||
Sbjct 7625 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 7662
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631
|||||||||| | || || ||||| |||| ||||| ||||| || ||||| ||
Sbjct 7662 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAAT 7603
Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691
| || |||||||||||||| | || ||||| ||||| | || ||||| ||||| ||||
Sbjct 7602 TATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAATATTG 7543
Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
| || || | |||||||| || ||||| || || |||
Sbjct 7542 CCAGCTATTCACTGCTCACCTATATGATTGCCCACGTC 7505
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| ||||| ||||| || ||||||||||| || || || || ||||| || ||||||||
Sbjct 10744 TATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 10803
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | ||| ||| |||| ||||| || || || || || | ||| ||||| ||||||
Sbjct 10804 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 10863
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
|| ||| | |||||||| ||||
Sbjct 10864 ACACCCTTTGCAGAGAGCTCTTTGG 10888
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | ||| |||||||| ||||| ||| | || || || || || |
Sbjct 10888 CCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 10829
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||| |||| ||| ||| | | |||||||| || ||||| || || || || ||||
Sbjct 10828 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 10769
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| || ||||| ||||| ||
Sbjct 10768 AGTGGAGGCATTTTGGAGCGGAATA 10744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447869486799840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |