Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq19977 159 3e-34 seq15741 120 2e-22 seq1195 96.9 3e-15 >seq19977 Length=118669 Score = 159 bits (176), Expect = 3e-34 Identities = 193/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 29555 AAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29614 || || |||||||||||||| | | || ||| | | || || ||| ||||| Sbjct 57694 AAGTCTTCTGCCTTAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGA 57635 Query 29615 AAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACG 29674 || ||||| ||||| |||| || |||| | || ||||| | || | ||||| | | Sbjct 57634 AAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATG 57575 Query 29675 TGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29734 ||||||||||| | ||||| | |||||||| || | |||||| ||||| || || ||| Sbjct 57574 TGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATC 57515 Query 29735 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCT 29794 || || ||||| || || |||||||| || || || ||||| || || ||||| || || Sbjct 57514 ATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCA 57455 Query 29795 GACCTCTGGTAGAGCTGGCACGA 29817 |||||||| ||||||||||| || Sbjct 57454 GACCTCTGATAGAGCTGGCAAGA 57432 >seq15741 Length=12914 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| |||||||| || ||||| || ||||| || || |||||||| || || || || Sbjct 7496 TAGCCCTGTGACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 7555 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||| ||||||||||| || | || || | Sbjct 7556 CACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAG 7615 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| | ||||| ||| Sbjct 7616 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGA 7661 Score = 102 bits (112), Expect = 7e-17 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 ||||||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 10756 AAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 10814 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 10815 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 10874 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 10875 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 10914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 30165 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30224 ||| |||||||||||||||||||| || | ||||| ||||||||||||||||| || | Sbjct 12160 TGATGAACCACAGCAGCTCCTCCAGCACTCCTTTCCAGAAGACCCTCTTGGTCGTTAGCA 12219 Query 30225 GGGGAAACTG 30234 | |||||||| Sbjct 12220 GTGGAAACTG 12229 >seq1195 Length=14407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 3095 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 3036 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || |||||||||||||||| | ||||| |||||| Sbjct 3035 ATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 2988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405816088106092