Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 159 3e-34
seq15741 120 2e-22
seq1195 96.9 3e-15
>seq19977
Length=118669
Score = 159 bits (176), Expect = 3e-34
Identities = 193/263 (73%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 29555 AAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29614
|| || |||||||||||||| | | || ||| | | || || ||| |||||
Sbjct 57694 AAGTCTTCTGCCTTAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGA 57635
Query 29615 AAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACG 29674
|| ||||| ||||| |||| || |||| | || ||||| | || | ||||| | |
Sbjct 57634 AAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATG 57575
Query 29675 TGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29734
||||||||||| | ||||| | |||||||| || | |||||| ||||| || || |||
Sbjct 57574 TGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATC 57515
Query 29735 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCT 29794
|| || ||||| || || |||||||| || || || ||||| || || ||||| || ||
Sbjct 57514 ATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCA 57455
Query 29795 GACCTCTGGTAGAGCTGGCACGA 29817
|||||||| ||||||||||| ||
Sbjct 57454 GACCTCTGATAGAGCTGGCAAGA 57432
>seq15741
Length=12914
Score = 120 bits (132), Expect = 2e-22
Identities = 126/166 (76%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772
|||||| |||||||| || ||||| || ||||| || || |||||||| || || || ||
Sbjct 7496 TAGCCCTGTGACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 7555
Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832
||| || || ||||| || || |||||||| ||||||||||| || | || || |
Sbjct 7556 CACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAG 7615
Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | ||||||||| ||||| | ||||| |||
Sbjct 7616 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGA 7661
Score = 102 bits (112), Expect = 7e-17
Identities = 123/162 (76%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075
||||||||||||||||| || || || ||||||| || ||||| || || ||||| |||
Sbjct 10756 AAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 10814
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||| |||| || || | || || || || ||||| ||||| || ||||| |
Sbjct 10815 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 10874
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177
||||||||||||| ||||| || || || || || |||||
Sbjct 10875 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 10914
Score = 82.4 bits (90), Expect = 6e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 30165 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30224
||| |||||||||||||||||||| || | ||||| ||||||||||||||||| || |
Sbjct 12160 TGATGAACCACAGCAGCTCCTCCAGCACTCCTTTCCAGAAGACCCTCTTGGTCGTTAGCA 12219
Query 30225 GGGGAAACTG 30234
| ||||||||
Sbjct 12220 GTGGAAACTG 12229
>seq1195
Length=14407
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| |||| || | |||||| | | ||| | |||||| || ||
Sbjct 3095 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 3036
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || |||||||||||||||| | ||||| ||||||
Sbjct 3035 ATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 2988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405816088106092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |