Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq32638 122 7e-23 seq22336 113 4e-20 >seq32638 Length=16397 Score = 122 bits (134), Expect = 7e-23 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || |||||||||||||| || | || |||||||| || Sbjct 13459 ATTCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCC 13517 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || ||||||||||| | |||||||| ||||||||||| || ||||| || || Sbjct 13518 TCTTTTCTTCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGC 13577 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 13578 CGCAAAAGCTACTA 13591 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || ||||||||||||||||| ||||| || ||| Sbjct 15610 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGTTTTCCATGGCA 15669 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || |||| ||||||||| | ||| ||||| Sbjct 15670 ATCTGGAAGCCATAGAAACATCGAGCTTCTGTGATTTGTACTTC 15713 >seq22336 Length=52721 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||||||||| || || || |||| ||| ||||| | || ||||| || Sbjct 42202 TCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCTTC 42261 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || | ||||| || Sbjct 42262 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGGCA 42321 Query 4692 AC 4693 || Sbjct 42322 AC 42323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 4927 TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 ||||| || | |||||| ||||| || || ||||||||||||||||| |||| || |||| Sbjct 46897 TTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAATATGA 46956 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || |||||||| | ||| || | || || || |||||||| || | || || | ||| Sbjct 46957 GAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTGACAAA 47016 Query 5046 TCAAC 5050 ||||| Sbjct 47017 TCAAC 47021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426684638340626