Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq32638 122 7e-23
seq22336 113 4e-20
>seq32638
Length=16397
Score = 122 bits (134), Expect = 7e-23
Identities = 108/134 (81%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621
|| || |||| | ||||| || || |||||||||||||| || | || |||||||| ||
Sbjct 13459 ATTCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCC 13517
Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681
||| || || ||||||||||| | |||||||| ||||||||||| || ||||| || ||
Sbjct 13518 TCTTTTCTTCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGC 13577
Query 4682 GGCAAACGCTACTA 4695
||||| |||||||
Sbjct 13578 CGCAAAAGCTACTA 13591
Score = 98.7 bits (108), Expect = 8e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| || ||||| || || || || ||||||||||||||||| ||||| || |||
Sbjct 15610 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGTTTTCCATGGCA 15669
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
||||| || || || || |||| ||||||||| | ||| |||||
Sbjct 15670 ATCTGGAAGCCATAGAAACATCGAGCTTCTGTGATTTGTACTTC 15713
>seq22336
Length=52721
Score = 113 bits (124), Expect = 4e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||||||||| || || || |||| ||| ||||| | || ||||| ||
Sbjct 42202 TCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCTTC 42261
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| |||||||| || | ||||| ||
Sbjct 42262 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGGCA 42321
Query 4692 AC 4693
||
Sbjct 42322 AC 42323
Score = 96.9 bits (106), Expect = 3e-15
Identities = 97/125 (78%), Gaps = 1/125 (1%)
Strand=Plus/Plus
Query 4927 TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985
||||| || | |||||| ||||| || || ||||||||||||||||| |||| || ||||
Sbjct 46897 TTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAATATGA 46956
Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045
|| |||||||| | ||| || | || || || |||||||| || | || || | |||
Sbjct 46957 GAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTGACAAA 47016
Query 5046 TCAAC 5050
|||||
Sbjct 47017 TCAAC 47021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426684638340626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |