Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq12754 178 2e-39 seq49267 113 6e-20 >seq12754 Length=56440 Score = 178 bits (196), Expect = 2e-39 Identities = 225/308 (73%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 5334 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5275 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| |||||||||||| | |||| Sbjct 5274 TATTGATAATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5215 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || ||||| || |||||||| || || | ||| | ||| Sbjct 5214 AGCAGATGGCGTTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATGG 5155 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | |||||||||||||| || || |||||||| || | || || | ||||||||||| Sbjct 5154 TTTCACCGAAGATGGCACCTGGCCGTGGCTTTTCTACGAGGAGGCCTGGGTACAGCTCCA 5095 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| |||| |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5094 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5035 Query 8588 TTATTAAT 8595 ||||| || Sbjct 5034 TTATTGAT 5027 Score = 138 bits (152), Expect = 2e-27 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || ||||| || ||||| || ||| |||||||| || |||||||| Sbjct 3306 ATGAGTCTGGTAGTTTGGAAGAGCTGCTCATCGTCCCACTCTGGATGCTCCTGTTTCAGG 3247 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | |||||||||||| ||||| || || || |||||||| | || || Sbjct 3246 ATGTCACAGACGCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCCGGG 3187 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 3186 ACCAAACCAAACACCTCCTGCCCCACAGAGAACTGCAAGTGTTCAGGTATGTGAGGAGGG 3127 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 3126 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 3067 Query 9484 T 9484 | Sbjct 3066 T 3066 >seq49267 Length=19024 Score = 113 bits (124), Expect = 6e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| | || || | ||||||||||||| ||||| ||||||||| | |||| Sbjct 13268 TCTTAACTATCTCAAAACCAGCTGCTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGG 13327 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || ||||| ||||| |||||||| || | ||| | || | Sbjct 13328 AGCAGATGGGGTTTCCAAGAAGCCCTTTCAGGGAAAACGGAGCTCCGATCTCCACCATAC 13387 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | ||||| |||| || || | || || || | || | ||||| Sbjct 13388 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 13447 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| || || | || ||||| || |||| | ||||||| Sbjct 13448 GAGCATCAATGTCTCCATACAGCTCTTCCAGCTCGGCTGCCTTCTCTTCCTCTCCTG 13504 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || ||||| || |||| ||||| Sbjct 15686 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCATCGTTCCAGGTGGGATGC 15745 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 15746 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 15805 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 15806 CAGAGCCCTGGCAGCAGCCCAAACACCTCCTGCCCCATGGCCAGCTGCTTCTCCTTGGGG 15865 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 || | | |||| |||||| ||||| | || ||||| ||||| |||| Sbjct 15866 ACAGTAGATGAGTAGACCATGTGAACCTGAGCATCCGTGACCTTTGGGGGGTACA 15920 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || ||||| ||||||||| | || |||||| | | || || ||| || ||| | | Sbjct 16436 CTCACCCCGTGTCCCAGTGCCTTGGTGAAGCCACGTCCCATCTTCCCAGAT--GTCTTGA 16493 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| |||||||| ||| |||| ||||||||||| | ||||||||| | |||| Sbjct 16494 AGAACTGGTGGGTGAAATGCTGGGCAAAGAAGGCAAACATCAGGTTGGTGCCTCGAGGAT 16553 Query 9768 CGG 9770 ||| Sbjct 16554 CGG 16556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716248439562880