Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq12754 178 2e-39
seq49267 113 6e-20
>seq12754
Length=56440
Score = 178 bits (196), Expect = 2e-39
Identities = 225/308 (73%), Gaps = 1/308 (0%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| || || || ||| | |||| || ||| | | ||
Sbjct 5334 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5275
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | || ||||| | ||| ||||||||||| |||||||||||| | ||||
Sbjct 5274 TATTGATAATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5215
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| |||| |||| || ||||| || |||||||| || || | ||| | |||
Sbjct 5214 AGCAGATGGCGTTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATGG 5155
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| |||||||||||||| || || |||||||| || | || || | |||||||||||
Sbjct 5154 TTTCACCGAAGATGGCACCTGGCCGTGGCTTTTCTACGAGGAGGCCTGGGTACAGCTCCA 5095
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587
||| |||| |||||| ||||| | ||||| || || || || |||||||||||
Sbjct 5094 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5035
Query 8588 TTATTAAT 8595
||||| ||
Sbjct 5034 TTATTGAT 5027
Score = 138 bits (152), Expect = 2e-27
Identities = 175/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| || || ||||| || ||||| || ||| |||||||| || ||||||||
Sbjct 3306 ATGAGTCTGGTAGTTTGGAAGAGCTGCTCATCGTCCCACTCTGGATGCTCCTGTTTCAGG 3247
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || || | |||||||||||| ||||| || || || |||||||| | || ||
Sbjct 3246 ATGTCACAGACGCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCCGGG 3187
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| ||||| |||| || || |||| | ||| || ||| || | | |||||
Sbjct 3186 ACCAAACCAAACACCTCCTGCCCCACAGAGAACTGCAAGTGTTCAGGTATGTGAGGAGGG 3127
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | |||| ||| || || | || ||||||||||| || |||||||||
Sbjct 3126 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 3067
Query 9484 T 9484
|
Sbjct 3066 T 3066
>seq49267
Length=19024
Score = 113 bits (124), Expect = 6e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||| || ||| | || || | ||||||||||||| ||||| ||||||||| | ||||
Sbjct 13268 TCTTAACTATCTCAAAACCAGCTGCTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGG 13327
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| ||| | | || ||||| ||||| |||||||| || | ||| | || |
Sbjct 13328 AGCAGATGGGGTTTCCAAGAAGCCCTTTCAGGGAAAACGGAGCTCCGATCTCCACCATAC 13387
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| || || || || | ||||| |||| || || | || || || | || | |||||
Sbjct 13388 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 13447
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
||| || | |||||| || || | || ||||| || |||| | |||||||
Sbjct 13448 GAGCATCAATGTCTCCATACAGCTCTTCCAGCTCGGCTGCCTTCTCTTCCTCTCCTG 13504
Score = 104 bits (114), Expect = 3e-17
Identities = 164/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| |||| |||||||| || ||||| || |||| |||||
Sbjct 15686 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCATCGTTCCAGGTGGGATGC 15745
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||||| | ||||| || | |||||| || | ||||||| |||||||||||
Sbjct 15746 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 15805
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||||| || | ||| ||||| |||| || || | ||||| || | | | |||
Sbjct 15806 CAGAGCCCTGGCAGCAGCCCAAACACCTCCTGCCCCATGGCCAGCTGCTTCTCCTTGGGG 15865
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466
|| | | |||| |||||| ||||| | || ||||| ||||| ||||
Sbjct 15866 ACAGTAGATGAGTAGACCATGTGAACCTGAGCATCCGTGACCTTTGGGGGGTACA 15920
Score = 86.0 bits (94), Expect = 9e-12
Identities = 94/123 (76%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707
|| ||||| ||||||||| | || |||||| | | || || ||| || ||| | |
Sbjct 16436 CTCACCCCGTGTCCCAGTGCCTTGGTGAAGCCACGTCCCATCTTCCCAGAT--GTCTTGA 16493
Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767
| |||||||| |||||||| ||| |||| ||||||||||| | ||||||||| | ||||
Sbjct 16494 AGAACTGGTGGGTGAAATGCTGGGCAAAGAAGGCAAACATCAGGTTGGTGCCTCGAGGAT 16553
Query 9768 CGG 9770
|||
Sbjct 16554 CGG 16556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716248439562880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |