Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2497 111 1e-19 seq38721 109 4e-19 >seq2497 Length=80144 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| |||||||||||||| || ||||| || ||||| | ||| |||| Sbjct 77335 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCTT 77394 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | ||| | |||||||| |||||||||| Sbjct 77395 CTTCTCTGGTGCTGAAACCCTGCTTATCCAGAAACTCACGTGATCCATTAGCATCCCAAA 77454 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | |||||| ||| || ||||||||| Sbjct 77455 TCTTCACGCCTTTTGCAGAGAGCTCTTTG 77483 >seq38721 Length=31838 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||| || || | |||||||||| |||| ||||| || ||||||||||| Sbjct 2344 CTTGAGTTCTCTGCTAAGCACTATATTAATTCTGTCTTTCAAAGGACGATTCTTCTCAGG 2285 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | ||||||||| ||| Sbjct 2284 AATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCTG 2235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361010246352728