Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq29519 120 4e-22 seq40451 114 2e-20 seq40850 100 3e-16 >seq29519 Length=205329 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 9308 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9249 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||||| ||||| || || |||||||| |||||||| ||||| || |||| Sbjct 9248 TCAGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGG 9189 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 9188 CAACCACTCTCTCACC 9173 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||||||| Sbjct 5688 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAATAT 5629 Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| |||| | | | ||| ||||| Sbjct 5628 TTTTCATCTGCTTTCAATTTGTTCCA 5603 >seq40451 Length=5959 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | ||| || ||||| |||||||| |||||||| || | || | Sbjct 3034 CCTCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCT 2975 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || ||||| ||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 2974 TCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 2915 Query 24277 C 24277 | Sbjct 2914 C 2914 >seq40850 Length=60012 Score = 100 bits (110), Expect = 3e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 51688 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGT 51747 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| |||||| ||||| ||| | | || || | |||||||| Sbjct 51748 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCGAGAAACTCAAAGATGTCCAAGTGCCACGG 51806 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCC 54176 |||| ||| |||| | | | ||||||| Sbjct 51807 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 51835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || ||||||| |||||| ||||||||||| || || || || ||||||| Sbjct 48054 CATATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTCACAGCTGGCTTCCAAAGCACCGT 48113 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || || | || || | || || || | || ||||| |||| Sbjct 48114 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGAT 48173 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | | || || || || || | || || ||||| || || || || | ||| | Sbjct 48174 ACCTCATCAAGATGAAAGCATCGGCCAGGCCCTGCACACCGATGCCAATGGGACGATGGC 48233 Query 53568 TCTTATTAGAGATTTCAGC 53586 | | || ||| |||||| Sbjct 48234 GCCTGTTGGAGCGTTCAGC 48252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | ||| || || || || || || || || | Sbjct 57917 CACTGAATACTTTCTTGGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCCGCCAGGA 57976 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || |||| || || || || ||| |||| || | ||| || |||| Sbjct 57977 TAGCATAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGTGTATCCA 58036 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || |||||||| || ||| | || | || || || |||||||| Sbjct 58037 GCTCCACCGTTGTGACACCACTGTACAACCCCTGAATCACCTTCAT 58082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593315435053440