Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6505 127 2e-24 seq12710 109 5e-19 >seq6505 Length=959 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | |||| ||||| ||||| || ||||| || || | | Sbjct 494 CCACCTCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 435 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 434 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 375 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | || |||| ||||||| Sbjct 374 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 315 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | ||| ||||||||||| || | || || ||||| || ||||| ||||| Sbjct 314 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 262 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | |||| ||||| ||||| || ||||| ||||| | |||||| | | || Sbjct 707 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 648 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | || |||||||| Sbjct 647 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCCTCCTTGTCC 588 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 587 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTC 528 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || ||||| || || ||||| Sbjct 527 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 496 >seq12710 Length=3026 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| ||||| | ||||| | | || |||||||| Sbjct 2717 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 2776 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| ||| | |||||||||||| |||||| Sbjct 2777 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2836 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | || |||| |||||| || | ||| ||||||||||| || Sbjct 2837 GCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTC 2896 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 2897 AGGGTCTTCACAAAGATCTGCAT 2919 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||| ||||| || ||||| ||||| | || || | | || |||||||| Sbjct 2489 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCATCTTCCAGCTGC 2548 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| ||| | |||||||||||| |||||| Sbjct 2549 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2608 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | || |||| |||||| || | ||| ||||||||||| || Sbjct 2609 GCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTC 2668 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 2669 AGGGTCTTCACAAAGATCTGCAT 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421977554169248