Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12710 145 8e-30 seq6505 136 4e-27 seq29519 96.9 4e-15 seq40451 91.5 2e-13 >seq12710 Length=3026 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || || || | | Sbjct 2919 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCTAGT 2860 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | |||||| Sbjct 2859 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2800 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||||| ||||||||| Sbjct 2799 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 2740 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || || ||||| | ||||| ||| Sbjct 2739 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCAGGGGTGGC 2692 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || || || | | Sbjct 2691 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCTAGT 2632 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | |||||| Sbjct 2631 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2572 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||| ||| |||||||||| Sbjct 2571 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACTCTCTCCGACTACAAC 2512 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| ||||| || || ||||| | ||||| || Sbjct 2511 ATCCAGAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCAGGGGTGG 2465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| || ||||| |||||||| || | ||||||||| |||||||||||||||| Sbjct 3021 CTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCCGACTACAACATCCAG 2962 Query 40876 AAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||| ||||| || || ||||| | ||||| ||| Sbjct 2961 AAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCAGGGGTGGC 2920 >seq6505 Length=959 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 496 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTAGAGCCCAGT 555 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| || || | |||||| Sbjct 556 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 615 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 616 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 675 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 676 ATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTGAGGGGTGGC 723 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 265 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 324 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | ||| Sbjct 325 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAC 384 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | |||||||| || ||| Sbjct 385 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTAC 444 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| || ||| ||||| |||| || ||| Sbjct 445 AACATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTGAGAGGTGGC 495 >seq29519 Length=205329 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| |||||||| || ||||| || ||||||||||||| || || |||||||||| Sbjct 9183 TGGTTGCCTTCGCTGCAGTCGAAGGAATCTTCTTTTCGGGTTCCTTTGCTGCCATATTTT 9242 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 9243 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTGATTAGCAGAG 9302 Query 117162 ACGAGG 117167 | |||| Sbjct 9303 ATGAGG 9308 >seq40451 Length=5959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 116605 GTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGC 116664 |||||||||||||||||| || || | ||||| |||| |||||||| ||||||||||| Sbjct 1 GTTCGTGATTTTCCCCATCCAGTATCACGACATCTGGCAGATGTACAAGAAGGCCGAGGC 60 Query 116665 GTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||||||| | ||||||||| Sbjct 61 TTCCTTCTGGACGGCAGAGGAGGTG 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514866738545280