Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq22548 104 2e-17 >seq22548 Length=9234 Score = 104 bits (114), Expect = 2e-17 Identities = 197/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| |||||||| || ||||| || || |||| ||||| || ||||| | | Sbjct 5022 GAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA-T 4964 Query 108336 CCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || || | |||||| ||| || ||||| |||| || ||||||| Sbjct 4963 CCCTGAAGTCCCAGGTGCAGTTCCTTCTAGCGAC---AAGTACGACATTTCCGACATGAA 4907 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| | ||||| ||||||||||||||||| || || || || || || || || Sbjct 4906 TGCGCTGGCCAGATTCGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGCACC 4847 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || |||| ||| ||||| || | | | || ||| ||||| || ||||| Sbjct 4846 CTACCCACCATGCAGCGGAATTCACGTTCGCTCTGTTTGTGTTTTTGGGGCAGGAGACCT 4787 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 4786 GAACTGGATCCTGCGAAACCACCACTTCTTCGCTAATAAGTTTGAC 4741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348036505581072