Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29519 129 7e-25 seq40451 114 2e-20 seq40850 102 1e-16 >seq29519 Length=205329 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 9308 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9249 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||||| ||| || || || ||||||||||||||||| |||||||| |||| Sbjct 9248 TCAGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGG 9189 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 9188 CAACCACTCTCTCACC 9173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct 5688 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAATAT 5629 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | | ||| ||||| Sbjct 5628 TTTTCATCTGCTTTCAATTTGTTCCA 5603 >seq40451 Length=5959 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||| |||||||| |||||||| |||||||| || | || | Sbjct 3034 CCTCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCT 2975 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || ||||| || || || || ||||||||||||||||||||||| ||||| | Sbjct 2974 TCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 2915 Query 33724 C 33724 | Sbjct 2914 C 2914 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 4498 GACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4439 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || |||||||||||||| ||||| ||||| Sbjct 4438 TCCAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 >seq40850 Length=60012 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| ||||||| |||||| ||||||| ||| || || || || ||||||| Sbjct 48054 CATATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTCACAGCTGGCTTCCAAAGCACCGT 48113 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| || | || || | || || || || || ||||| |||| Sbjct 48114 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGAT 48173 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | | || || || || || | || || ||||| || || || || | ||| | Sbjct 48174 ACCTCATCAAGATGAAAGCATCGGCCAGGCCCTGCACACCGATGCCAATGGGACGATGGC 48233 Query 62806 TCTTATTAGAGATTTCAGC 62824 | | || ||| |||||| Sbjct 48234 GCCTGTTGGAGCGTTCAGC 48252 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||||||||||||||| || || | || || ||||| | || ||| Sbjct 51688 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGT 51747 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || || ||||| |||||| ||||| ||| | | || || | |||||||| Sbjct 51748 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCGAGAAACTCAAAGATGTCCAAGTGCCACGG 51806 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCC 63414 |||| ||| ||||| | | | ||||||| Sbjct 51807 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 51835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629386741779840