Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq29519 123 3e-23 seq40451 114 2e-20 seq10551 107 3e-18 seq40850 100 4e-16 >seq29519 Length=205329 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 9308 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9249 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||||| ||||| || || |||||||| |||||||| ||||| || |||| Sbjct 9248 TCAGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGG 9189 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 9188 CAACCACTCTCTCACC 9173 >seq40451 Length=5959 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | ||| || ||||| |||||||| |||||||| || | || | Sbjct 3034 CCTCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCT 2975 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || ||||| ||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 2974 TCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 2915 Query 36300 C 36300 | Sbjct 2914 C 2914 >seq10551 Length=8447 Score = 107 bits (118), Expect = 3e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||||||||||||| ||||| Sbjct 3956 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAAGTATATGCAGTCAGTCCAAGA 4015 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||| | || ||||| ||| Sbjct 4016 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATAGATACGTCATACAAA 4069 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || |||||||||||||||| ||| Sbjct 2659 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGACGTCC 2718 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 | ||||| ||||| | || | | || |||||||| || | || || || || | Sbjct 2719 AGGTAGAGATTGACTGCAGCCAGTATGTACTCTTCAGGGGACAATTTGTGCATCAGCAAA 2778 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 2779 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCGAACACCAAC 2838 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 2839 TCTATTGTCTCACT 2852 >seq40850 Length=60012 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || ||| Sbjct 51688 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGT 51747 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| ||||| ||| | | || || | |||||||| Sbjct 51748 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCGAGAAACTCAAAGATGTCCAAGTGCCACGG 51806 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||| ||| ||||| | | | ||||||| Sbjct 51807 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 51835 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| || || ||||||| |||||| ||||||||||| || || || || ||||||| Sbjct 48054 CATATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTCACAGCTGGCTTCCAAAGCACCGT 48113 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 |||||||||| || || || | || || | || || || | || ||||| |||| Sbjct 48114 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGAT 48173 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || || || || | || || ||||| || || || || | ||| | Sbjct 48174 ACCTCATCAAGATGAAAGCATCGGCCAGGCCCTGCACACCGATGCCAATGGGACGATGGC 48233 Query 65599 TCTTATTAGAGATTTCAGC 65617 | | || ||| |||||| Sbjct 48234 GCCTGTTGGAGCGTTCAGC 48252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 57917 CACTGAATACTTTCTTGGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCCGCCAGGA 57976 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || |||| || || || || ||| |||| || ||||| || |||| Sbjct 57977 TAGCATAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGTGTATCCA 58036 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || |||||||| || ||| | || | || || || |||||||| Sbjct 58037 GCTCCACCGTTGTGACACCACTGTACAACCCCTGAATCACCTTCAT 58082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657722543987520