Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq40850 93.3 4e-14 seq12710 91.5 1e-13 seq6505 91.5 1e-13 >seq40850 Length=60012 Score = 93.3 bits (102), Expect = 4e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTT 153742 |||||||||| ||||| |||||||||||| || | || ||| | || |||||||| || Sbjct 50336 ACTATTTCCGTACACAGATTGCTGCATTTGATG-GTCCCCAAGTTCTGCTGATTGCTCTT 50394 Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||||| |||| ||| ||||| | |||||| ||||||||||| || Sbjct 50395 TCGGTTGCAAGAGTCTTTGTAGACCATGTAGGGTGTGCCGGTCTC 50439 >seq12710 Length=3026 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || | |||| | Sbjct 2705 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCA 2764 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| ||||||| | ||||| || || || |||||||| ||| Sbjct 2765 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 2824 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||||| ||| | Sbjct 2825 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATG 2884 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 2885 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2919 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || || || || || ||||| || ||| | |||| | Sbjct 2477 CGCAGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCA 2536 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || || || |||||||| ||| Sbjct 2537 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 2596 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | ||||||||||||| ||| | Sbjct 2597 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATG 2656 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 2657 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2691 >seq6505 Length=959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || || || || || ||||| ||||| Sbjct 495 GCCACCTCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 436 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || || ||| ||||||| | ||||| || || || Sbjct 435 CAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 376 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| |||||||||| Sbjct 375 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 316 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| |||| || || || || || ||||| Sbjct 315 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495724642617600