Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29519 138 2e-27 seq40451 125 1e-23 seq40850 93.3 6e-14 >seq29519 Length=205329 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 9308 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9249 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||||| ||||| || || ||||||||||||||||| ||||| || |||| Sbjct 9248 TCAGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGG 9189 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 9188 CAACCACTCTCTCACC 9173 >seq40451 Length=5959 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || ||||| || ||||| |||||||| |||||||| || | || | Sbjct 3034 CCTCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCT 2975 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || ||||| ||||| || |||||||||||||||||||||||||| ||||| | Sbjct 2974 TCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 2915 Query 50102 CAAC 50105 | || Sbjct 2914 CTAC 2911 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 4498 GACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4439 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| || |||||||||||||| ||||| ||||| Sbjct 4438 TCCAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 >seq40850 Length=60012 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 51688 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGT 51747 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || || ||||| |||||| ||||| ||| | | || || | |||||||| Sbjct 51748 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCGAGAAACTCAAAGATGTCCAAGTGCCACGG 51806 Query 80058 TTCCAAGTATATGGC 80072 |||| ||| ||||| Sbjct 51807 CTCCAGGTAGATGGC 51821 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||| ||||||| ||| ||||||| |||||| || || || || || |||||| Sbjct 48056 TATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTCACAGCTGGCTTCCAAAGCACCGTAA 48115 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||||||| || ||||| | || || | || || || | || ||||| ||||| Sbjct 48116 TAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGATAC 48175 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | | || || || || || | || || ||||| || || || || | ||| | | Sbjct 48176 CTCATCAAGATGAAAGCATCGGCCAGGCCCTGCACACCGATGCCAATGGGACGATGGCGC 48235 Query 79480 TTATTAGAAATTTCAGC 79496 | || || |||||| Sbjct 48236 CTGTTGGAGCGTTCAGC 48252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717777432313920