Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq29519 84.2 2e-11 seq40451 82.4 7e-11 >seq29519 Length=205329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||| ||||| || ||||||||||| ||||| |||||||| || || ||||| Sbjct 15111 TTGATATTCTGAAACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCCAGAGAAATGTTTTC 15052 Query 13643 CATAAAATCAAATGGATTT 13661 ||| |||||||| |||||| Sbjct 15051 CATGAAATCAAAAGGATTT 15033 >seq40451 Length=5959 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | |||||||||| |||| || |||||||| || || || Sbjct 4501 TTCGACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 4442 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| || ||||||||||| || ||||| ||||| Sbjct 4441 CCTTCCAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479399818075200