Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq37580 143 4e-29 seq23322 95.1 2e-14 >seq37580 Length=111331 Score = 143 bits (158), Expect = 4e-29 Identities = 210/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 4857 GGAACGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAAGGAGGCGG 4798 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || | || ||||| | || ||||||||||| || |||||||| | || | Sbjct 4797 TATTGATTATTTCGAAGCCCACTTTCCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGAG 4738 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || || || || |||| ||| | || Sbjct 4737 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAAGGGCGCTCCCATCTCCACCATCG 4678 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || ||||||||||| || || |||||||| || | | || | ||||| ||||| Sbjct 4677 TTTCGCCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGGCCCGGGTACAGCTCCA 4618 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| || |||||||| ||||| | ||||| || || ||||| |||||||||| Sbjct 4617 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTG 4561 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 |||||||| || || || || || || || ||| ||| || ||||| || |||||||| Sbjct 2831 ATGAGTCGGGTAGTTTGGAAGAGCTGCTCATCATCCCACTCGGGATGCTCCCGTTTCAGG 2772 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 2771 ACATCACAGACACGGTTGTGTTCCCTCAGCCATATGGTAGCATACATCATCAAGCCTGGG 2712 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || ||||||| | ||| | ||| || | | ||||| Sbjct 2711 ACCAACCCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2652 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 2651 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2592 Query 9862 TG 9863 || Sbjct 2591 TG 2590 >seq23322 Length=13790 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 2693 TCTTCACTATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 2634 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | || | Sbjct 2633 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCTATCTCCACCATAC 2574 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | |||| |||| || || | || || || || ||||||| Sbjct 2573 TTTCCCCAAAAATACCACTGGGTTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 2514 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 2513 GAGCATCAATGTCTCCATACAG 2492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708040098184320