Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19319 123 4e-24 seq12923 122 1e-23 >seq19319 Length=31826 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1847 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1788 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 1787 CCGCCGCCTGGCTCGGCGCGGCGGTGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1728 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || ||| ||| |||| || || || ||| || || Sbjct 1727 GCGCGGCGTGCTGAAGGTCTTTCTAGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1668 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | || || || | || || || || Sbjct 1667 GCACGCCAAGCGCAAGACTGTCACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 1608 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 1607 ACGCACTCTCTACGGCTTTGG 1587 >seq12923 Length=38876 Score = 122 bits (134), Expect = 1e-23 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| ||||| Sbjct 15312 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCTAT 15253 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 15252 TCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCTGGGCTCATCTACGAGGAGAC 15193 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | | ||||| | || || ||| ||| |||| ||| || || || | || Sbjct 15192 GCGCGGCATCCTGAAGGTTTTTCTGGAGAACGTGATCCGTGACGCCGTCACTTACATGGA 15133 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||| | || || ||||||||||| | |||||| | || || || | || || || || Sbjct 15132 GCACACCAAGCGCAAGACTGTCACGGCTATGGATGTGGTGTACGCCCTCAAGCGCCAGGG 15073 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | |||| ||||| || ||||| ||| Sbjct 15072 ACGCACCCTTTACGGTTTCGGTGGTTAAACTT 15041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79025161806504