Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq29519 138 1e-27 seq40451 120 4e-22 seq40850 104 3e-17 >seq29519 Length=205329 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 9308 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9249 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||||| ||| || || || ||||||||||||||||| |||||||| |||| Sbjct 9248 TCAGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGG 9189 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 9188 CAACCACTCTCTCACC 9173 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33691 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33750 |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||||||| Sbjct 5688 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAATAT 5629 Query 33751 TTTTCGTCTGGTGTTAGTTTATTCCA 33776 ||||| |||| | | | ||| ||||| Sbjct 5628 TTTTCATCTGCTTTCAATTTGTTCCA 5603 >seq40451 Length=5959 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || ||||| || ||||| |||||||| |||||||| || | || | Sbjct 3034 CCTCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCT 2975 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || ||||| || || || |||||||||||||||||||||||||| ||||| | Sbjct 2974 TCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 2915 Query 33446 C 33446 | Sbjct 2914 C 2914 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 4498 GACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4439 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || |||||||||||||| ||||| ||||| Sbjct 4438 TCCAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 >seq40850 Length=60012 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 51688 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGT 51747 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || || || ||||| |||||| ||||| ||| | | || || | |||||||| Sbjct 51748 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCGAGAAACTCAAAGATGTCCAAGTGCCACGG 51806 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCC 63363 |||| ||| ||||| | | | ||||||| Sbjct 51807 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 51835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| || || ||||||| |||||| ||||||||||| || || || || ||||||| Sbjct 48054 CATATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTCACAGCTGGCTTCCAAAGCACCGT 48113 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 |||||||||| || || || | || || | || || || | || ||||| |||| Sbjct 48114 AATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGAT 48173 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | | || || || || || | || || ||||| || || || || | ||| | Sbjct 48174 ACCTCATCAAGATGAAAGCATCGGCCAGGCCCTGCACACCGATGCCAATGGGACGATGGC 48233 Query 62755 TCTTATTAGAGATTTCAGC 62773 | | || ||| |||||| Sbjct 48234 GCCTGTTGGAGCGTTCAGC 48252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622521041820480