Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6505 109 5e-19 seq12710 93.3 4e-14 seq40850 87.8 2e-12 >seq6505 Length=959 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | || | ||| || ||||| || |||||||| ||| Sbjct 724 AGCCACCCCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 665 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| || || ||||||||||| || |||| | | ||||||||| |||| Sbjct 664 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 605 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || || || ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 604 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCTA 545 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || ||||||||||||||| Sbjct 544 CCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATG 495 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | ||| || ||||| || ||||||||||| Sbjct 495 GCCACCTCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 436 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 435 CAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 376 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 375 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 316 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 315 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 267 >seq12710 Length=3026 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||||| || | || | ||| |||||||| || |||||||| || Sbjct 2692 GCCACCCCTGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2751 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 2752 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 2811 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 2812 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCAC 2871 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 2872 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 2920 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | ||| || ||||| || |||||||| ||| | |||||| Sbjct 2477 CGCAGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCA 2536 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | ||||||||| || || || ||||| ||| Sbjct 2537 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 2596 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || | | ||| | || | ||| | | Sbjct 2597 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATG 2656 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || || || ||||||||| Sbjct 2657 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 2692 >seq40850 Length=60012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| ||||||||||| |||| || |||||||| || || | |||||| | | Sbjct 50348 CACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTTCGGTTGCAAGAG 50407 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA 145798 || ||||||| |||||| ||| ||| ||||| ||||| || | |||| Sbjct 50408 TCTTTGTAGACCATGTAGGGTGTGCCGGTCTCTGTCTGCGATTCAATGATA 50458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471689896043520