Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq40850 93.3 8e-14 seq40451 89.7 1e-12 >seq40850 Length=60012 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | ||| || || Sbjct 51693 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGTTCTTC 51752 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | | || | ||| ||||||| ||| | |||||| ||||||| Sbjct 51753 TTTCCCAGTGTTCTTCTTTAAGTCGAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 51812 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||||| || | || || |||| || Sbjct 51813 GTAGATGGCAAAAGCCCCAGGCCTCT 51838 >seq40451 Length=5959 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || |||||||| || ||| | || || ||||| |||||| Sbjct 2911 GTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATTTTCTGG 2970 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 | ||| | | | | ||||| |||||||| || || || |||||||||||||| ||| Sbjct 2971 TTGAAGAAAAGAGGGCTAATGCCGGGACTCACTTTTTCTAATGAACTCATCAGCAGAGAC 3030 Query 42828 GAGG 42831 |||| Sbjct 3031 GAGG 3034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943693177553280