Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6505 134 1e-26 seq12710 122 9e-23 >seq6505 Length=959 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 707 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 648 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| |||||||| || || || || Sbjct 647 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCCTCCTTGTCC 588 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 587 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTC 528 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || |||||||| ||||| Sbjct 527 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 496 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||| | | |||||| | ||| Sbjct 479 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCT 420 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 419 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 360 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 359 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 300 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || ||||| || Sbjct 299 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 265 >seq12710 Length=3026 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | || |||||| | ||||| |||||||||||| Sbjct 2495 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCG 2554 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 2555 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 2614 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | ||||| || | || | ||||||||| |||| || Sbjct 2615 ACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 2674 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 2675 TTCACAAAGATCTGCAT 2691 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||||||| | ||||| ||||||||||| Sbjct 2723 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2782 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 2783 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 2842 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | ||||| || | || | ||||||||| |||| || Sbjct 2843 ACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 2902 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 2903 TTCACAAAGATCTGCAT 2919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499302992992320