Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq12710 87.8 1e-12 >seq12710 Length=3026 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| |||| | | | | ||||| | || Sbjct 2489 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCATCTTCCAGCTGC 2548 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | |||| | ||| ||||| ||||| ||||||||||| || ||| Sbjct 2549 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2608 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || ||| || || || | ||| ||||| || || ||| Sbjct 2609 GCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTC 2668 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 2669 AGGGTCTTCACAAAGATCTGCAT 2691 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| || ||| | | | | ||||| | || Sbjct 2717 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 2776 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | ||| ||||| ||||| ||||||||||| || ||| Sbjct 2777 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2836 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || ||| || || || | ||| ||||| || || ||| Sbjct 2837 GCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTC 2896 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 2897 AGGGTCTTCACAAAGATCTGCAT 2919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357153620429480