Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq37580 150 3e-31 seq23322 104 3e-17 >seq37580 Length=111331 Score = 150 bits (166), Expect = 3e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | || ||||| || ||||| ||| || ||||| ||| | || |||| Sbjct 4857 GGAACGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAAGGAGGCGG 4798 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | ||| ||||||||||| || ||||||||| | || | Sbjct 4797 TATTGATTATTTCGAAGCCCACTTTCCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGAG 4738 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || || || || |||| ||| | || Sbjct 4737 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAAGGGCGCTCCCATCTCCACCATCG 4678 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || |||||||||||||| || || || ||||| |||| | ||| | ||| || || | Sbjct 4677 TTTCGCCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGGCCCGGGTACAGCTCCA 4618 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 4617 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 4562 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || || ||||| || | |||||| ||| |||| || || || || |||| || Sbjct 2831 ATGAGTCGGGTAGTTTGGAAGAGCTGCTCATCATCCCACTCGGGATGCTCCCGTTTCAGG 2772 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| ||||| | ||||||||| |||||||||||||| || |||||||| || || || Sbjct 2771 ACATCACAGACACGGTTGTGTTCCCTCAGCCATATGGTAGCATACATCATCAAGCCTGGG 2712 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || || || ||||| || | ||| || | ||| ||| | || || | | || | Sbjct 2711 ACCAACCCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2652 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 2651 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2592 Query 9967 TG 9968 || Sbjct 2591 TG 2590 >seq23322 Length=13790 Score = 104 bits (114), Expect = 3e-17 Identities = 189/277 (68%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || | | ||| || ||||| || || || || Sbjct 2731 CTTCACATTGAGGCACACGAGCTTCTCGAGCGATGCTGTCTTCACTATCTCAAAGCCAGT 2672 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 | || || || || ||||||||||||||| | |||||||||||| ||| | | || Sbjct 2671 TGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAG 2612 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| |||||||||||| || | ||| | || || || || || || ||| ||| Sbjct 2611 CCCCTTCAGGGAAAACGGAGCTCCTATCTCCACCATACTTTCCCCAAAAATACCACTGGG 2552 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| || | || | ||| || | ||| ||||| || Sbjct 2551 TTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 2492 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||||| ||| || || |||| | ||| ||| || Sbjct 2491 CTCTTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 2455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723232897675200