Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq24399 134 2e-26 >seq24399 Length=19255 Score = 134 bits (148), Expect = 2e-26 Identities = 364/563 (65%), Gaps = 27/563 (5%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || ||||| ||||| || || || Sbjct 17291 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 17350 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || || || || ||||| || || || ||||| |||| ||||| Sbjct 17351 AAATCCTGCAGCAGTTTCTGGATCTTTGGGATACGGGTAGACCCACCAACCAGCACGATG 17410 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | || || |||| ||| | || || || | || || ||||| |||| Sbjct 17411 TCGTGGATCTGTGACTTGTCGAGCTTGGCATCCCGCAGGGCCTTCTCCACAGGGTCCAGG 17470 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| | ||| |||||||| || || | ||| ||||| || ||| Sbjct 17471 GTGCCGCGGAACAGGTCTGCATTCAGCTCCTCAAAGCGAGCTCTGGTGATGGACGTGTAG 17530 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||||||||| || | | || | | || || | Sbjct 17531 AAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTGGACGACAGA 17590 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAA-------------------- 7379 || ||||| || |||||||||||||| || | ||| |||| Sbjct 17591 GTGCGCTTCGCACGCTCACACGCCGTGCGCAGACGGCGAAANNNNNNNNNNNNNNNNNNN 17650 Query 7380 -GGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 || || || |||||||| || || || || || || | |||| Sbjct 17651 NNNNNNNNNNNNTTCTCGCTGATGTCTTTCTTGTGCTTGCGCTTGAATTCGGCGATGAAG 17710 Query 7439 T-GTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 | || || | | | | ||||| ||||| ||||||||||| || || || || || Sbjct 17711 TGGTTGACCATGCGGTT---GTCGAAGTCTTCCCCACCCAAGTGAGTGTCACCTGCAGTG 17767 Query 7496 GCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCA 7555 | ||| ||||||||||| || ||||||| | | | || |||||||| || ||||| Sbjct 17768 GATTTCACTTCAAAGATGCCATCTTCAATAGTAAGAATGGACACATCAAAGGTGCCACCT 17827 Query 7556 CCCAGGTCAAAAATGAGTACGTT 7578 || || || || ||||| ||||| Sbjct 17828 CCAAGATCGAAGATGAGAACGTT 17850 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 ||||||||||||| | |||||||| || |||||||||||| || || || || | | Sbjct 18934 CAAAAACTGTGTTGGTTGGGTTCATCGCAACTTGGTTCTTCGCGGCATCACCAATCAACC 18993 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 || || ||||| || || ||||| ||| || || || || || |||||||| | Sbjct 18994 TCTCGGTA---TCCGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCGTTGG 19050 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | || ||||| || | | ||| | || || ||||| ||||| || || || | || Sbjct 19051 CGATGATTTCCACCTTCCCATGTTGGAACACACCAACGCAGGAATAAGTGGTGCCGAGAT 19110 Query 8136 CAATACCGA 8144 | || |||| Sbjct 19111 CGATTCCGA 19119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634698305651520