Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12710 150 4e-31 seq6505 127 5e-24 >seq12710 Length=3026 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || ||||| || || || || ||||| |||| ||||| Sbjct 2471 CTGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 2530 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 2531 CGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 2590 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| || || || |||||| |||||||||||||| | ||||| |||||| Sbjct 2591 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGG 2650 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| || || || || | ||||| Sbjct 2651 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2691 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| || | || || Sbjct 2699 CTGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 2758 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 2759 CGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 2818 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| || || || |||||| |||||||||||||| | ||||| |||||| Sbjct 2819 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGG 2878 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| || || || || | ||||| Sbjct 2879 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2919 >seq6505 Length=959 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || |||||||| | || || Sbjct 489 TCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGT 430 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 429 GCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 370 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || |||||||||||||| ||| ||||| || Sbjct 369 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 313 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || |||| || || || || | ||||| Sbjct 312 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 268 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| |||| || || | |||||||| Sbjct 704 ACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 645 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| |||||||| || || ||||| || Sbjct 644 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGG 585 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || |||||||| | ||| Sbjct 584 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCTACCTCAAGGGTGATGGTC 528 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 527 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108703628728376