Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq12710 107 1e-18 seq6505 102 5e-17 >seq12710 Length=3026 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||| | | || || | ||| | ||| ||| ||||| ||||| ||||| Sbjct 2462 TTACCACCCCTGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 2521 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || || | || |||| |||||||| || |||||||| || || | |||||||| | Sbjct 2522 GAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 2581 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || |||||||| ||||| ||||| || || || | |||| | || Sbjct 2582 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTAGGCT 2639 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||| ||||| || ||||| || |||||||||||||||||||| Sbjct 2640 CCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2691 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 2729 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 2788 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| ||||| || Sbjct 2789 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 2846 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | ||| || || | ||| ||||| || ||||| || ||||||| Sbjct 2847 TCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 2906 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 2907 CAAAGATCTGCAT 2919 >seq6505 Length=959 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || || ||| | || |||| |||||||| || |||||||| Sbjct 459 TTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 400 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| || || | Sbjct 399 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 342 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 341 TTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 282 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 281 ACAAAGATCTGCATGTT 265 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||| | ||| ||| ||||| ||||| ||||| || Sbjct 722 CCACCCCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 663 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || |||||||| || || | |||||||| | || Sbjct 662 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 603 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | |||||||||||| ||||| || || || || || | |||| || ||| | Sbjct 602 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCTA 545 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | ||||| || || |||||||| Sbjct 544 CCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324417070200384