Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq40451 138 1e-27 seq29519 102 9e-17 seq40850 82.4 9e-11 >seq40451 Length=5959 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||||||||| || | || ||||| || |||||||| | Sbjct 3034 CCTCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCT 2975 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||||| || || ||||| || ||||||||||| || ||||||||||||||||||| Sbjct 2974 TCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 2915 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 2914 CTACTACACGTTCTCC 2899 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| |||||||| || || Sbjct 971 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 912 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| || |||||||| Sbjct 911 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 867 >seq29519 Length=205329 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || |||| |||||| || || || | ||||||||||| || || || | Sbjct 9308 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 9249 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||| | |||||| || || |||||||| || ||||| ||||| || || | Sbjct 9248 TCAGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGG 9189 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 9188 CAACCACTCTCTCACC 9173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 19335 AAATCTTTCG-ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 ||| ||||| |||| |||||||| || ||||||||||| |||||||||||||| | | Sbjct 5705 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 5646 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 |||| ||||||| ||||||||||| | ||| | ||||| | | || || || | Sbjct 5645 CATGAGAGATAAAATATTTTTCATCTGCTTTCAATTTGTTCCAGTGAGGAAGGTCCTTTG 5586 Query 19454 ATAAATCTAC 19463 | ||||| || Sbjct 5585 ACAAATCAAC 5576 >seq40850 Length=60012 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/153 (71%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || ||||||||| | | ||||| | | |||||| | ||| ||||| | ||||||| Sbjct 50307 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCCGTACACAGATTGCTGCATTTGA 50366 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || ||||| || || ||||| | ||| || | ||| ||||| | ||| | | Sbjct 50367 TGGTCCCCAAGTTCTGCTGATTGCTCTTTCGGTTGCAAGAGTCTTTGTAGACCATGTAGG 50426 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || || ||| |||| ||||||||||||| Sbjct 50427 GTGTGCCGGTCTCTGTCTGCGATTCAATGATAG 50459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561724261369920