Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq40451 120 4e-22 >seq40451 Length=5959 Score = 120 bits (132), Expect = 4e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | |||||||||||| || | ||| ||||||| |||||||| || Sbjct 3032 TCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCTTC 2973 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || | ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 2972 AACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGCT 2913 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 2912 ACTACACGT 2904 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | |||||||| || ||||| | || || ||||| ||||| ||||| Sbjct 4496 CATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCTTC 4437 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 || || ||||||||||| || ||||| ||||| Sbjct 4436 CAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591911596077120