Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2497 118 9e-22 seq38721 87.8 1e-12 >seq2497 Length=80144 Score = 118 bits (130), Expect = 9e-22 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||||||||||||||| || || || ||||||| || Sbjct 77330 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 77389 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || ||||| || ||||| ||| ||| ||| |||| ||| || | || || || || | Sbjct 77390 CCCTTCTTCTCTGGTGCT-GAAACCCTGCTTATCCAGAAACTCACGTGATCCATTAGCAT 77448 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 77449 CCCAAATCTTCACGCCTTTTGCAGAGAGCTCTTTGGCATTTGTCGAACC 77497 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 |||||||||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 74234 TAGCCCGGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 74293 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || |||||||| ||||| || || || || || || | Sbjct 74294 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAGTTCACCATTCAG 74353 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| | ||||| || Sbjct 74354 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAGGCCATCAG 74398 >seq38721 Length=31838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || ||||| || |||| || || |||||| ||| ||| | |||||| || || Sbjct 2343 TTGAGTTCTCTGCTAAGCACTATATTAATTCTGTCTTTCAAAGGACGATTCTTCTCAGGA 2284 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| ||||||| || ||| Sbjct 2283 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408345053082344