Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq22548 239 5e-58 >seq22548 Length=9234 Score = 239 bits (264), Expect = 5e-58 Identities = 611/924 (66%), Gaps = 12/924 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | | ||||||| || || |||| ||||| || || || |||||| Sbjct 4676 AGATACAGAGCTTTATGTCGCAAATACTCTTCCAAACATTTCACCGCAAAAGGGTCAACA 4735 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| ||||| | ||||| ||| | |||||||||| || |||| Sbjct 4736 TCAGTGTCAAACTTATTAGCGAAGAAGTGGTG---GTTTCGCAGGATCCAGTTCAGGTCT 4792 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || | ||| || || || || || || | ||| | ||| |||| || ||||| | || Sbjct 4793 CCTGCCCCAAAAACACAAACAGAGCGAACGTGAATTCCGCTGCATGGTGGGTAGGGTGCA 4852 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | |||||||||||| ||||||||||||| || || ||||| | ||| | |||| Sbjct 4853 CCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACGAATCTGGCCAGCGCATTCATG 4912 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331 ||||| ||||||| |||| | ||||| ||||| || || | || || | ||| Sbjct 4913 TCGGAAATGTCGTACTTGTCGCTAGAAGGAACTGCACCTGGGACTTCAGGGATTCTCTGA 4972 Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCT 160391 | || |||||||||| || || |||||||| ||||| || | ||| || || |||| Sbjct 4973 ATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCGATCAACTTA 5032 Query 160392 CCGATTAACCTG---TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTAC 160448 ||| ||| || ||| || || | |||| | || ||||| || Sbjct 5033 AGTATTTTGCTGCTTTCTAACAG---GTACTCTACAAATCTTCTGCTAACTACAAAATAA 5089 Query 160449 GCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTA 160508 || || || || || || || | | ||| ||| | |||||| || ||||| Sbjct 5090 GCACTACCAGAAAAAATTGGGGTACTGAGAGGTGGCAGTTGTTTGTCTATGCCTGTGTTC 5149 Query 160509 GACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGC 160568 | || | | | | | || |||||||||| || || || | ||| Sbjct 5150 TTTATTTTGCCATCAATAATCTCATGATGCTTCTTCCATCTTACTTCTTTATAAACAGGC 5209 Query 160569 ATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCT 160628 || |||||| || | ||||| |||| | || ||| | | || || || || Sbjct 5210 ATTTTTTCCGTTTCCAAGCTGTTTACACCTTTAAGGCTTTTTAATTTCTCAACAATTTCC 5269 Query 160629 AGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCG 160688 |||| ||||| | |||||||| | || || | |||||| | ||| ||||| || | Sbjct 5270 TGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAA 5329 Query 160689 CTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCG 160748 || || || || ||||||| ||||| ||||||||||| | |||||| ||||| Sbjct 5330 CTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCA 5389 Query 160749 TACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC 160808 || || || |||| || | |||| | |||||| ||||| ||||| || || || ||| Sbjct 5390 TATACAACACTCTCCAGCTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATCCCC 5449 Query 160809 ACCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTT 160867 || | ||| || || | || | | |||| ||| | ||| | ||| || | || Sbjct 5450 TTAACAG-CAGCAAAAAAAGATTCTGGAGACTTTTTGTCAATGTGAATGCAGTAAAAATT 5508 Query 160868 CTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCAC 160927 |||||| || ||||| | || || | || || | |||||| || || |||| | ||| Sbjct 5509 CTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCAC 5568 Query 160928 GATAGAGTAGGCTATCGGAAACTC 160951 || || || || | ||||| || Sbjct 5569 TATTGAATAAGCAACTGGAAATTC 5592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576824324345280