Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2070 170 2e-36 seq23427 158 1e-32 seq6279 154 2e-31 seq13340 152 6e-31 seq39856 138 1e-26 seq38854 95.1 1e-13 >seq2070 Length=1594 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 707 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 648 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 647 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 588 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 587 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 528 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 527 GCACCTGCTTCAGCACCTTGTA 506 >seq23427 Length=8199 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 666 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 607 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| || | | Sbjct 606 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAAA 547 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||| ||| |||||||| Sbjct 546 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATACCCGTGTCGGGGT 487 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 486 GGACCTGCTTCAGCACCTTGTA 465 >seq6279 Length=1238 Score = 154 bits (170), Expect = 2e-31 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 1254347 GGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGT 1254406 ||| || |||||| ||| | || |||||||| ||||||||||| |||| | ||| || Sbjct 405 GGCGAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGT 346 Query 1254407 GTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1254466 ||||||||| |||||||||| || |||||| | ||||||| || | ||||| Sbjct 345 CGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAAATGTC 286 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||||| ||||||||||||| ||| | |||| || |||||| |||||||||||| Sbjct 285 GTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCCGTGTCGGGGTGCAC 226 Query 1254527 CTGCTTGAGCACCTTGTA 1254544 |||||| ||||||||||| Sbjct 225 CTGCTTCAGCACCTTGTA 208 >seq13340 Length=5718 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| || |||||||| |||| | || Sbjct 4782 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTTTGGATCTCCCGCGAGGTGA 4723 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | | ||||| |||| | Sbjct 4722 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCAATGCGCTCGAAGA 4663 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| | ||| | |||| |||||||| |||||||| Sbjct 4662 TATCGTTGACGAACGAGTTCATGATCCCCATGGCCTTGGAAGAGATGCCTGTGTCGGGGT 4603 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| | ||||||||| Sbjct 4602 GCACCTGCTTCAACACCTTGTA 4581 >seq39856 Length=34685 Score = 138 bits (152), Expect = 1e-26 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| || | | || Sbjct 1015 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAGGTGA 956 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 955 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 896 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 895 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGT 836 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | || ||||| ||||||||||||| Sbjct 835 GGACTTGCTTCAGCACCTTGTAGA 812 >seq38854 Length=6444 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 708 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 767 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | |||||||| ||| | Sbjct 768 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGGCCGAAGA 827 Query 1254463 TGTCGTTG-ACAAA 1254475 || ||||| ||||| Sbjct 828 TGGCGTTGCACAAA 841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102647964028776