Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6505 114 1e-20 seq12710 95.1 1e-14 >seq6505 Length=959 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 268 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 327 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 328 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 387 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| ||||| ||| Sbjct 388 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTACAAC 447 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| |||| || | || ||| Sbjct 448 ATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTGAGAGGTGGC 495 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || || || || || ||||| ||| Sbjct 496 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTAGAGCCCAGT 555 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 556 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCTGACCAG 615 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 616 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 675 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| |||| || | || ||| Sbjct 676 ATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTGAGGGGTGGC 723 >seq12710 Length=3026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 2691 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCTAGT 2632 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2631 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2572 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 2571 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACTCTCTCCGACTACAAC 2512 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || ||| | || |||| Sbjct 2511 ATCCAGAAGGAATCCACCCTGCACCTTGTCCTGCG 2477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 2919 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCTAGT 2860 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2859 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2800 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | | || || || ||| Sbjct 2799 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 2740 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 2739 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCG 2705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449589825051840