Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2070 219 7e-51 seq23427 201 2e-45 seq39856 197 2e-44 seq13340 197 2e-44 seq6279 150 3e-30 seq38854 141 1e-27 seq734 102 1e-15 >seq2070 Length=1594 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 746 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 687 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 686 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 627 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 626 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 567 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 566 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 507 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 506 ACACGTAGATCGAGTA 491 >seq23427 Length=8199 Score = 201 bits (222), Expect = 2e-45 Identities = 198/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||||||| ||||||| |||||| ||| Sbjct 705 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 646 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 645 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 586 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| || | ||||||||||| |||||||||| Sbjct 585 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAAATGTCGTTGACGAACGAGTTCA 526 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||| ||| ||||||||| |||||||| |||||||||| Sbjct 525 TGATGCCCATGGCCTTGGACGAGATACCCGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 466 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 465 ACACGTAGATCGAGTA 450 >seq39856 Length=34685 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||||||||| ||||| |||||| ||||||| || || | | Sbjct 1054 TGTACTTGGTGACGGCCTTGGTACCCTCCGAGACAGCGTGCTTGGCCAGCTCTCCTGGGA 995 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| | ||| ||| ||||||||| Sbjct 994 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 935 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | ||||||||||| || ||||||| Sbjct 934 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 875 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| || ||||| |||||||||| Sbjct 874 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGGACTTGCTTCAGCACCTTGT 815 Query 1485710 AAAC 1485713 | || Sbjct 814 AGAC 811 >seq13340 Length=5718 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 4821 TGTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 4762 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| || |||||||| || | | ||| || ||||||||| | Sbjct 4761 GCAGGAGCCGCACGGCCGTTTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 4702 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | | ||||| |||| || |||||||| |||||||||| Sbjct 4701 GCGCCAGGCGCGACGCCTCGCCGGCAATGCGCTCGAAGATATCGTTGACGAACGAGTTCA 4642 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||||| ||| | ||| |||||||| |||||||||||||||||| | |||||||| Sbjct 4641 TGATCCCCATGGCCTTGGAAGAGATGCCTGTGTCGGGGTGCACCTGCTTCAACACCTTGT 4582 Query 1485710 AAAC 1485713 | || Sbjct 4581 ACAC 4578 >seq6279 Length=1238 Score = 150 bits (166), Expect = 3e-30 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 1485513 GGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT 1485572 ||| || |||||| ||| | || |||||||| ||||||||||| || | | ||| || Sbjct 405 GGCGAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGT 346 Query 1485573 GTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 ||||||||| | |||||||||| |||||| | ||||||| || | ||||| Sbjct 345 CGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAAATGTC 286 Query 1485633 GTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCAC 1485692 |||||| |||||||||||||| ||| | ||| || |||||| |||||||||||| Sbjct 285 GTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCCGTGTCGGGGTGCAC 226 Query 1485693 CTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||| ||||||||||| || || |||||| Sbjct 225 CTGCTTCAGCACCTTGTACACGTAGATCGAGTA 193 >seq38854 Length=6444 Score = 141 bits (156), Expect = 1e-27 Identities = 136/173 (79%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 669 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 728 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 729 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 788 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG-ACAAA 1485641 |||||||||| |||||| | |||||||| ||| ||| ||||| ||||| Sbjct 789 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGGCCGAAGATGGCGTTGCACAAA 841 >seq734 Length=673 Score = 102 bits (112), Expect = 1e-15 Identities = 167/244 (68%), Gaps = 34/244 (14%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| |||||||| ||||| || ||||||||| ||||||| |||| | ||| Sbjct 556 TGTACTTAGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCGCTGGGCA 497 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | |||||| ||||||||||| | ||| ||| || ||||||| |||| Sbjct 496 GCAGGAGCCACACGGCCGTCTGGATCTCCC--GTGAGGATGTTGGAGCGCTTG-TAGT-- 442 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||| | ||| |||| |||| |||||| |||||||||| Sbjct 441 --------------------GTGCC-AGGCGCTCGAAGATGTTGTTGACGAACGAGTTCA 403 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||| |||| |||||||||| Sbjct 402 TGATGCCCATGGCCTTGGACGAGATGCCTGTGTCGGG--------GCTTCAGCACCTTGT 351 Query 1485710 AAAC 1485713 | || Sbjct 350 ACAC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910424733025592