Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq35454 129 1e-24 >seq35454 Length=36794 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | |||||||| || ||||| || |||||||| || ||||| Sbjct 27229 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 27288 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| || |||| || || || || ||||| ||||| || ||||| Sbjct 27289 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 27348 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | |||||||| ||| ||||||| || || Sbjct 27349 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 27389 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| |||| || ||||| ||||| |||||||| | |||||||| Sbjct 29406 GCTTTTTTTGGAGCTCAGATGAACTCGTTTATTCATGTCATTATGTACATGTATTATGGA 29465 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | || || | |||||||| || ||| | || ||| Sbjct 29466 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTGACCATA 29525 Query 58661 ATGCAATTGGTA 58672 ||||||||||| Sbjct 29526 TTGCAATTGGTA 29537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || ||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 30037 GGTGCAGTTCCACGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 30096 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| |||| || || || || ||||||| Sbjct 30097 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 30156 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 30157 TAACTTCTACTATCGGACATATAAG 30181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902793176398080