Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq16704 111 2e-19 seq24609 104 3e-17 seq26139 86.0 8e-12 >seq16704 Length=9757 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 8652 CCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTT 8711 ||| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||| Sbjct 243 CCTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 302 Query 8712 CGATTCCCCGACGAGGAGCAG 8732 ||||||||||||| |||| || Sbjct 303 CGATTCCCCGACGGGGAGGAG 323 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 246 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 305 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 306 TTCCCCGACGGGGAGG 321 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 320 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 261 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 260 TACTAACGAGGA 249 >seq24609 Length=24580 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||||| |||||||||| ||||| |||| ||||| ||||||||||||||||||| Sbjct 3208 TTTTTCCTCGTTTGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCG 3267 Query 8714 ATTCCCCGACGAGGAGC 8730 ||||||||| | ||||| Sbjct 3268 ATTCCCCGATGGGGAGC 3284 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||| |||||||||| ||||| |||| ||||| ||||||||||||||||||||||| Sbjct 3212 TCCTCGTTTGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATTC 3271 Query 11789 CCCGACGAGGAG 11800 ||||| | |||| Sbjct 3272 CCCGATGGGGAG 3283 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| | ||||||| |||||||||||||||||||| |||| |||||||| | ||||||| Sbjct 3283 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 3224 Query 139413 TACTAACGAGGA 139424 ||| |||||||| Sbjct 3223 TACAAACGAGGA 3212 >seq26139 Length=140788 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| ||| |||||| | ||||||||| ||||||| || Sbjct 94054 GTCCTCGTTAGTATAGTGGTGAGTATCCCCATCTGTCACGCGGGAGACCTGGGTTCGGTT 94113 Query 11788 CCCCGACGAGGAGG 11801 |||| | | ||||| Sbjct 94114 CCCCAATGGGGAGG 94127 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| ||| |||||| | ||||||||| ||||||| ||| Sbjct 94055 TCCTCGTTAGTATAGTGGTGAGTATCCCCATCTGTCACGCGGGAGACCTGGGTTCGGTTC 94114 Query 8718 CCCGACGAGGAG 8729 ||| | | |||| Sbjct 94115 CCCAATGGGGAG 94126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652398188872320